Co-expression analysis

Gene ID	Zm.8818.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At2g01500: PFS2 (PRETTY FEW SEEDS 2) (HF=9e-2)
Module size	6 genes
NF	0.38
%ile	41.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.1	0.98	Zm.8818.1.A1_at	BM268303	-	-	9e-2	At2g01500	PFS2 (PRETTY FEW SEEDS 2)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.879.1.A1_at	BM379556	hypothetical protein LOC100276616	-	7e+0	At5g35300	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.9708.1.A1_at	BQ538651	DNA binding protein	-	4e-1	At4g16160	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.98	Zm.297.1.S1_at	CO527021	CMP-KDO synthetase1	-	2e-13	At1g53000	cytidylyltransferase family	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.98	Zm.18265.1.A1_at	CA404918	hypothetical protein LOC100277671	-	5e+0	At3g27590	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.98	Zm.766.1.A1_at	AI649708	-	-	1e-18	At5g64600	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.9	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.54627.2.S1_a_at, orthologous to the query gene, Zm.8818.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	86.0	PtpAffx.54627.2.S1_a_at	At2g01500	hypothetical protein	-	1e+0	At4g15390	transferase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.83	97.0	Ptp.5948.1.S1_at	At2g01500	hypothetical protein	-	2e+0	At5g40370	glutaredoxin, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	Ptp.5990.1.S1_at	At2g01500	-	-	5e-29	At2g42220	rhodanese-like domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	PtpAffx.147900.1.S1_s_at	At2g01500	hypothetical protein	-	1e-3	At1g56085	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	Ptp.3113.1.S1_at	At2g01500	2-cys peroxiredoxin	-	7e-84	At3g11630	2-cys peroxiredoxin, chloroplast (BAS1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.1263.1.A1_a_at	At2g01500	hypothetical protein	-	4e-1	At5g08050	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	PtpAffx.44879.1.A1_at	At2g01500	-	-	7e-43	At1g17650	GLYR2 (GLYOXYLATE REDUCTASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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