Co-expression analysis

Gene ID Zm.8818.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At2g01500: PFS2 (PRETTY FEW SEEDS 2) (HF=9e-2)
Module size 6 genes
NF 0.38
%ile 41.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5369.10.98Zm.8818.1.A1_atBM268303--9e-2At2g01500PFS2 (PRETTY FEW SEEDS 2)O.I.H.G.S.X.
0.5065.70.98Zm.879.1.A1_atBM379556hypothetical protein LOC100276616-7e+0At5g35300unknown proteinO.I.H.G.S.X.
0.4455.70.98Zm.9708.1.A1_atBQ538651DNA binding protein-4e-1At4g16160mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family proteinO.I.H.G.S.X.
0.4352.80.98Zm.297.1.S1_atCO527021CMP-KDO synthetase1-2e-13At1g53000cytidylyltransferase familyO.I.H.G.S.X.
0.2216.90.98Zm.18265.1.A1_atCA404918hypothetical protein LOC100277671-5e+0At3g27590unknown proteinO.I.H.G.S.X.
0.2115.50.98Zm.766.1.A1_atAI649708--1e-18At5g64600unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.998.7GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.098.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.898.6GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.398.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.498.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.897.9GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.897.9GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.496.2GSM202298B73 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os04g0380300, orthologous to the query gene, Zm.8818.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4458.1Os04g0380300At2g01500-Cyclin-like F-box domain containing protein7e-2At1g67480kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.094.9Os09g0484900At2g01500-Sodium-dicarboxylate cotransporter-like1e-18At5g47560TDT (TONOPLAST DICARBOXYLATE TRANSPORTER)O.I.H.G.S.X.
0.052.5Os03g0638200At2g01500-Transporter-like protein3e-1At3g13050transporter-relatedO.I.H.G.S.X.
0.042.0Os03g0401100At2g01500-Octicosapeptide/Phox/Bem1p domain containingprotein4e-14At2g35050protein kinase family proteinO.I.H.G.S.X.
0.031.4Os01g0357100At2g01500-Ferredoxin--nitrite reductase, chloroplastprecursor (EC 1.7.7.1)1e-3At2g15620NIR1 (NITRITE REDUCTASE 1)O.I.H.G.S.X.
0.021.0Os04g0555300At2g01500-Major facilitator superfamily protein5e-3At3g47420glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putativeO.I.H.G.S.X.
0.021.0Os08g0114300At2g01500-Plant-specific FAD-dependent oxidoreductase familyprotein7e-2At2g46750FAD-binding domain-containing proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage