CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.8802.1.A1_at

Gene name
Homology with Arabidopsis Similar to At3g05590: RPL18 (RIBOSOMAL PROTEIN L18) (HF=4e+0)

Module size 14 genes

NF 0.59

%ile 78.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.65 82.1 0.98 Zm.8802.1.A1_at BM075706 - - 4e+0 At3g05590 RPL18 (RIBOSOMAL PROTEIN L18) O.I. H.G. S.X.
0.75 90.8 0.99 Zm.5791.2.A1_at AW438331 - - 2e-2 At4g23570 SGT1A O.I. H.G. S.X.
0.70 87.0 0.99 Zm.18467.1.A1_at AY107639.1 - - 5e+0 At5g35920 CYP79A4P O.I. H.G. S.X.
0.65 82.1 0.99 Zm.18298.1.A1_at CO531061 senescence-associated protein - 1e+0 At3g54130 josephin family protein O.I. H.G. S.X.
0.64 81.7 0.99 Zm.12553.1.S1_at AI666225 - - 5e-1 At2g35760 integral membrane family protein O.I. H.G. S.X.
0.62 79.8 0.99 Zm.10128.2.S1_x_at BM378587 - - 3e+0 At2g38540 LP1 O.I. H.G. S.X.
0.61 79.5 0.99 Zm.8774.1.A1_at BM075843 - - 5e+0 At5g20100 unknown protein O.I. H.G. S.X.
0.61 79.5 0.99 Zm.13919.1.A1_at AF057523.1 hypoxically induced transcript 3 - 5e+0 At5g04210 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.60 77.8 0.99 Zm.11570.1.A1_at CF057654 - - 1e+0 At5g05550 transcription factor O.I. H.G. S.X.
0.59 76.1 0.99 Zm.15077.1.A1_at CF057940 - - 2e+0 At5g08315 - O.I. H.G. S.X.
0.57 75.1 0.99 Zm.13919.1.S1_at AF057523.1 hypoxically induced transcript 3 - 5e+0 At5g04210 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.44 55.7 0.99 Zm.470.1.A1_at AF145755.1 THA4 - 2e+0 At5g28750 thylakoid assembly protein, putative O.I. H.G. S.X.
0.40 48.5 0.99 Zm.8097.1.A1_at BM336868 - - 2e+0 At3g21940 receptor protein kinase-related O.I. H.G. S.X.
0.38 44.2 0.99 ZmAffx.296.1.S1_at AI670429 - - 8e-1 At2g37950 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.5 99.0 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.3 99.0 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4 98.9 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3 98.9 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.2 98.8 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6 98.7 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6 98.7 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4 98.5 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7 98.3 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5 97.1 GSM205422 Mo17xB73 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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