Co-expression analysis

Gene ID	Zm.873.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g38230: CPK26 (HF=3e-16)
Module size	6 genes
NF	0.63
%ile	84.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	65.7	0.94	Zm.873.1.S1_at	AW067411	-	-	3e-16	At4g38230	CPK26	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.94	Zm.6835.1.A1_at	CK786946	-	-	3e+0	At1g19150	LHCA6	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.94	Zm.7010.2.A1_at	AY106286.1	-	-	1e-5	At1g56110	NOP56 (Arabidopsis homolog of nucleolar protein Nop56)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.93	Zm.7010.1.A1_a_at	CF049770	nucleolar protein Nop56	-	1e-30	At3g12860	nucleolar protein Nop56, putative	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.95	Zm.6836.1.A1_at	AI065428	-	-	5e+0	At3g61260	DNA-binding family protein / remorin family protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.94	Zm.513.1.S2_at	AF007793.1	retinoblastoma-related protein 1	-	2e-6	At3g12280	RBR1 (RETINOBLASTOMA-RELATED 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.7	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.5	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.0	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM162264	Mutant 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage