Co-expression analysis

Gene ID	Zm.8600.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g52200: unknown protein (HF=6e-2)
Module size	6 genes
NF	0.08
%ile	4.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.1	0.86	Zm.8600.1.A1_at	AY107085.1	-	-	6e-2	At5g52200	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.89	Zm.7094.2.S1_at	CA403709	60S ribosomal protein L7a	-	3e-80	At3g62870	60S ribosomal protein L7A (RPL7aB)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.88	Zm.8470.1.S1_at	AF493561.1	sucrose-phosphatase	-	4e+0	At5g17220	ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12)	O.I.	H.G.	S.X.	Please select
0.10	4.6	0.86	Zm.9960.1.A1_at	BM331809	-	-	1e+0	At5g54490	PBP1 (PINOID-BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.08	3.4	0.86	Zm.5261.1.A1_at	CF041434	hypothetical protein LOC100273065	-	2e-37	At2g41540	GPDHC1	O.I.	H.G.	S.X.	Please select
0.03	1.1	0.86	Zm.7128.2.A1_at	CO526884	hypothetical protein LOC100276381	-	5e+0	At5g44100	ckl7 (Casein Kinase I-like 7)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.9	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.2	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.0	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the wheat gene, Ta.10334.2.A1_at, orthologous to the query gene, Zm.8600.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	83.6	Ta.10334.2.A1_at	At5g52200	-	-	1e-6	At3g08840	D-alanine--D-alanine ligase family	O.I.	H.G.	S.X.	Please select
0.52	73.7	Ta.17059.1.S1_at	At5g52200	-	-	5e-8	At3g55760	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	60.9	Ta.2766.1.S1_at	At5g52200	starch synthase isoform IV	-	5e-7	At4g18240	ATSS4	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.10473.3.S1_a_at	At5g52200	-	-	2e-11	At3g17040	HCF107 (HIGH CHLOROPHYLL FLUORESCENT 107)	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.10473.1.S1_at	At5g52200	-	-	6e-11	At3g17040	HCF107 (HIGH CHLOROPHYLL FLUORESCENT 107)	O.I.	H.G.	S.X.	Please select
0.38	54.7	TaAffx.112884.1.S1_at	At5g52200	-	-	1e+0	At5g46430	60S ribosomal protein L32 (RPL32B)	O.I.	H.G.	S.X.	Please select
0.34	48.1	Ta.11815.1.A1_at	At5g52200	-	-	4e+0	At5g45880	pollen Ole e 1 allergen and extensin family protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.17651.1.S1_at	At5g52200	Starch synthase IIb precursor	-	2e+0	At5g16580	BGLU2 (BETA GLUCOSIDASE 2)	O.I.	H.G.	S.X.	Please select
0.30	40.9	TaAffx.50279.1.S1_at	At5g52200	-	-	1e+1	At5g14930	SAG101 (SENESCENCE-ASSOCIATED GENE 101)	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.1364.1.S1_at	At5g52200	geranylgeranyl hydrogenase	-	4e-6	At1g74470	geranylgeranyl reductase	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.5600.1.S1_s_at	At5g52200	-	-	2e-1	At1g03600	photosystem II family protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	Ta.4383.1.A1_at	At5g52200	-	-	1e+0	At5g27020	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	Ta.27964.1.S1_at	At5g52200	-	-	1e-2	At5g13160	PBS1 (avrPphB susceptible 1)	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.4866.1.S1_at	At5g52200	-	-	3e-3	At1g74530	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	22.4	Ta.7624.1.A1_x_at	At5g52200	-	-	3e-1	At5g14060	CARAB-AK-LYS	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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