Co-expression analysis

Gene ID	Zm.859.1.A1_at
Gene name	hypothetical protein LOC100191283
Homology with Arabidopsis	Similar to At4g28420: aminotransferase, putative (HF=8e-1)
Module size	6 genes
NF	0.63
%ile	84.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	95.6	0.97	Zm.859.1.A1_at	CF060267	hypothetical protein LOC100191283	-	8e-1	At4g28420	aminotransferase, putative	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	Zm.5229.1.A1_at	CO519750	ATP-dependent transporter ycf16	-	4e-24	At3g10670	ATNAP7	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.17189.1.A1_at	BM268883	-	-	5e+0	At5g60540	PDX2 (PYRIDOXINE BIOSYNTHESIS 2)	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.97	Zm.15306.1.A1_at	CK369690	phytol kinase	-	9e+0	Atmg00160	-	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.7750.4.S1_at	AW499152	-	-	3e-28	At1g75780	TUB1	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.2548.1.A1_at	AY106256.1	-	-	2e-26	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.6	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM202319	Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
8.1	98.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM202314	Mo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

Inter-species module comparison

A co-expression module including the grape gene, 1618777_at, orthologous to the query gene, Zm.859.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.7	1618777_at	At4g28420	hypothetical protein LOC100241782	-	5e-25	At5g53970	aminotransferase, putative	O.I.	H.G.	S.X.	Please select
0.57	79.8	1609882_s_at	At4g28420	-	-	1e-72	Atcg00670	-	O.I.	H.G.	S.X.	Please select
0.43	61.5	1615830_at	At4g28420	hypothetical protein LOC100247422	-	1e-21	At1g18180	oxidoreductase, acting on the CH-CH group of donors	O.I.	H.G.	S.X.	Please select
0.40	57.7	1617236_at	At4g28420	hypothetical protein LOC100243255	-	7e-40	At1g79510	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	1616186_at	At4g28420	hypothetical protein LOC100257260	-	2e-14	At4g27390	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	1613394_at	At4g28420	-	-	0	Atcg01050	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Back to the CoP portal site

Back to the KAGIANA project homepage