Co-expression analysis

Gene ID	Zm.859.1.A1_at
Gene name	hypothetical protein LOC100191283
Homology with Arabidopsis	Similar to At4g28420: aminotransferase, putative (HF=8e-1)
Module size	6 genes
NF	0.63
%ile	84.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	95.6	0.97	Zm.859.1.A1_at	CF060267	hypothetical protein LOC100191283	-	8e-1	At4g28420	aminotransferase, putative	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	Zm.5229.1.A1_at	CO519750	ATP-dependent transporter ycf16	-	4e-24	At3g10670	ATNAP7	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.17189.1.A1_at	BM268883	-	-	5e+0	At5g60540	PDX2 (PYRIDOXINE BIOSYNTHESIS 2)	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.97	Zm.15306.1.A1_at	CK369690	phytol kinase	-	9e+0	Atmg00160	-	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.7750.4.S1_at	AW499152	-	-	3e-28	At1g75780	TUB1	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.2548.1.A1_at	AY106256.1	-	-	2e-26	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.6	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM202319	Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
8.1	98.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM202314	Mo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

Inter-species module comparison

A co-expression module including the soybean gene, Gma.10835.1.S1_at, orthologous to the query gene, Zm.859.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	89.7	Gma.10835.1.S1_at	At4g28420	tyrosine aminotransferase	-	7e-17	At5g53970	aminotransferase, putative	O.I.	H.G.	S.X.	Please select
0.63	82.9	GmaAffx.89996.1.S1_s_at	At4g28420	-	-	1e+0	At5g59110	subtilisin-like serine protease-related	O.I.	H.G.	S.X.	Please select
0.60	80.7	GmaAffx.19618.1.A1_at	At4g28420	-	-	7e-24	At1g43670	fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative	O.I.	H.G.	S.X.	Please select
0.58	78.8	Gma.3888.2.S1_at	At4g28420	-	-	3e-18	At5g56640	MIOX5	O.I.	H.G.	S.X.	Please select
0.57	78.8	GmaAffx.10497.1.S1_at	At4g28420	-	-	5e-1	At5g17170	ENH1 (enhancer of sos3-1)	O.I.	H.G.	S.X.	Please select
0.54	74.8	Gma.3888.3.S1_at	At4g28420	-	-	1e+0	At5g04238	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	73.1	GmaAffx.78028.2.S1_at	At4g28420	-	-	3e-13	At1g32200	ATS1	O.I.	H.G.	S.X.	Please select
0.50	71.7	Gma.1691.1.S1_at	At4g28420	-	-	7e-43	At1g80160	lactoylglutathione lyase family protein / glyoxalase I family protein	O.I.	H.G.	S.X.	Please select
0.47	66.6	GmaAffx.73451.1.S1_at	At4g28420	-	-	8e-2	At4g13330	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	59.3	Gma.7161.1.S1_at	At4g28420	-	-	2e-4	At1g67480	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.39	54.5	GmaAffx.61707.1.S1_at	At4g28420	-	-	1e+1	At5g40500	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	GmaAffx.92059.1.S1_at	At4g28420	-	-	2e-6	At2g33710	AP2 domain-containing transcription factor family protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	Gma.8147.2.S1_at	At4g28420	-	-	4e-13	At1g70290	ATTPS8	O.I.	H.G.	S.X.	Please select
0.28	39.0	GmaAffx.11178.1.A1_at	At4g28420	-	-	3e+0	At5g27770	60S ribosomal protein L22 (RPL22C)	O.I.	H.G.	S.X.	Please select
0.26	33.9	GmaAffx.78028.1.S1_at	At4g28420	-	-	2e-14	At1g32200	ATS1	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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