Co-expression analysis

Gene ID Zm.859.1.A1_at
Gene name hypothetical protein LOC100191283
Homology with ArabidopsisSimilar to At4g28420: aminotransferase, putative (HF=8e-1)
Module size 6 genes
NF 0.63
%ile 84.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8395.60.97Zm.859.1.A1_atCF060267hypothetical protein LOC100191283-8e-1At4g28420aminotransferase, putativeO.I.H.G.S.X.
0.6785.80.97Zm.5229.1.A1_atCO519750ATP-dependent transporter ycf16-4e-24At3g10670ATNAP7O.I.H.G.S.X.
0.6077.80.98Zm.17189.1.A1_atBM268883--5e+0At5g60540PDX2 (PYRIDOXINE BIOSYNTHESIS 2)O.I.H.G.S.X.
0.5369.10.97Zm.15306.1.A1_atCK369690phytol kinase-9e+0Atmg00160-O.I.H.G.S.X.
0.4048.50.98Zm.7750.4.S1_atAW499152--3e-28At1g75780TUB1O.I.H.G.S.X.
0.4048.50.98Zm.2548.1.A1_atAY106256.1--2e-26At4g02570ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.698.7GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.398.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.098.6GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.698.3GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.798.1GSM202319Mo17 19 day after pollination embryo tissue, biological replicate 3GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo dataLink to GEO
8.198.0GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.596.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.195.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.895.5GSM202314Mo17 19 day after pollination embryo tissue, biological replicate 2GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo dataLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g28420, orthologous to the query gene, Zm.859.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At4g28420828959aminotransferase, putativeF:1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity;P:cellular amino acid and derivative metabolic process, biosynthetic process;C:cellular_component unknown;BOPAMFO.I.H.G.S.X.
0.4862.5At4g35120829664kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPVBOFAO.I.H.G.S.X.
0.4862.5At5g10880830955tRNA synthetase-related / tRNA ligase-relatedF:proline-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:prolyl-tRNA aminoacylation, translation;C:cytoplasm;BOMFAPO.I.H.G.S.X.
0.4457.2At5g44880834518transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4253.9At5g351503771255transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4253.9At5g44270834450-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.H.G.S.X.
0.4253.9At4g03160828054-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.H.G.S.X.
0.4152.4At2g40310818623glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAO.I.H.G.S.X.
0.4152.4At2g076603767968transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.4050.8At4g38070829963bHLH family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:mitochondrion;MOBFPAVO.I.H.G.S.X.
0.4050.8At2g37740818351ZFP10 (ZINC-FINGER PROTEIN 10)F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PMOFO.I.H.G.S.X.
0.3948.4At2g107403767791transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3948.4At1g54720841913early-responsive to dehydration protein-related / ERD protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3846.7At2g05350815083unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3745.0At2g26940817235zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MPOFO.I.H.G.S.X.
0.3541.6At4g11770826783kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFAO.I.H.G.S.X.
0.3541.6At3g22920821864peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putativeF:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:cellular_component unknown;MOBFPAVO.I.H.G.S.X.
0.3439.8At5g14900831342helicase associated (HA2) domain-containing proteinF:helicase activity;P:biological_process unknown;C:cellular_component unknown;MBFOPO.I.H.G.S.X.
0.3338.1At4g35170829670-F:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.3338.1At5g35640833536-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3338.1At2g11360815607transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3235.7At1g14470838009pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAO.I.H.G.S.X.
0.3235.7At3g25850822179DC1 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.H.G.S.X.
0.3235.7At3g308303769152transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3133.8At4g22440828339unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3133.8At2g05900815142SDG11 (SET DOMAIN-CONTAINING PROTEIN 11)Predicted to encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain.O.I.H.G.S.X.
0.3032.1At4g13610826994MEE57 (maternal effect embryo arrest 57)F:protein binding, DNA binding, DNA (cytosine-5-)-methyltransferase activity;P:embryonic development ending in seed dormancy, DNA methylation;C:nucleus;BOMPAFVO.I.H.G.S.X.
0.3032.1At4g03890825697transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3032.1At4g076003770530transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.3032.1At1g74630843802pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:endomembrane system;POMFBO.I.H.G.S.X.
0.3032.1At2g072003768448cysteine-type peptidaseF:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknownO.I.H.G.S.X.
0.2930.3At4g037303770544transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2930.3At5g28130832887transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2830.3At2g25470817085AtRLP21 (Receptor Like Protein 21)F:protein binding;P:signal transduction;C:chloroplast;PMOBFAVO.I.H.G.S.X.
0.2830.3At2g15670816060-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2830.3At3g60790825250F-box protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PMO.I.H.G.S.X.
0.2830.3At3g42600823272transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2830.3At1g32430840137F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2726.2At2g29780817528kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOVAFO.I.H.G.S.X.
0.2726.2At5g49260834986unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2726.2At4g35710829723unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.2624.4At1g73910843728ATARP4A (Actin-related proteins 4A)Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP family of genes. Component of chromatin remodeling complexes, involved in chromatin-mediated gene regulation.O.I.H.G.S.X.
0.2522.6At5g02980831482kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBFOAO.I.H.G.S.X.
0.2522.6At5g46400834683PRP39-2F:unknown;P:RNA processing;C:intracellular;OMFPBVAO.I.H.G.S.X.
0.2522.6At5g57450835850XRCC3Involved in homologous recombination and recombinational repair, mutants are sterile, hypersensitive to DNA crosslinking agents, show aberrant meiosis with extensive chromosome fragmentationO.I.H.G.S.X.
0.2522.6At3g44210823544unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2420.7At4g07480826186transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2420.7At1g15590838129-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2319.3At2g42340818835unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOO.I.H.G.S.X.
0.2319.3At1g127203766711transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2217.5At3g43940823510unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2217.5At5g348803771222transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.2115.8At4g08730826442unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO.I.H.G.S.X.
0.2115.8At1g03490839487ANAC006 (Arabidopsis NAC domain containing protein 6)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:unknown;PMOVBFO.I.H.G.S.X.
0.2115.8At4g26380828744DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOFO.I.H.G.S.X.
0.2115.8At2g29920817542unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOO.I.H.G.S.X.
0.2014.4At2g36560818229DNA-binding protein-relatedF:unknown;P:unknown;C:unknown;OMPFBVO.I.H.G.S.X.
0.1912.7At1g29780839856NLI interacting factor (NIF) family proteinF:phosphatase activity;P:unknown;C:mitochondrion;MOFPBVO.I.H.G.S.X.
0.1912.7At5g348403771203transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.1811.4At1g60720842366-F:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.1811.4At4g16080827293unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.1710.2At1g36756840586unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.1710.2At1g66170842932MMD1 (MALE MEIOCYTE DEATH 1)encodes a PHD-domain containing protein required for male meiosis. Gene is expressed in developing male meiocytes and protein is localized to the nucleus.O.I.H.G.S.X.
0.168.8At1g475203767382transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.157.8At2g155403768274transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.157.8At2g23100816842DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:chloroplast;PMOFBVAO.I.H.G.S.X.
0.146.8At2g39160818501unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.146.8At2g25380817077-pseudogene of zinc finger protein-relatedO.I.H.G.S.X.
0.135.8At2g062603768543transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.124.9At3g61730825346unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.H.G.S.X.
0.114.1At4g03580825658-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPO.I.H.G.S.X.
0.114.1At1g423603767241transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.114.1At2g29600817509kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBVOAFO.I.H.G.S.X.
0.114.1At5g369903771337transposable element geneF:unknown;P:unknown;C:unknownO.I.H.G.S.X.
0.051.1At1g26410839183FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:cellular_component unknown;FBPOAMO.I.H.G.S.X.
0.030.6At4g23280828427protein kinase, putativeF:kinase activity;P:defense response;C:chloroplast;MPOBFVAO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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