Co-expression analysis

Gene ID Zm.8576.1.A1_at
Gene name caffeic acid 3-O-methyltransferase
Homology with ArabidopsisSimilar to At5g54160: ATOMT1 (O-METHYLTRANSFERASE 1) (HF=4e-2)
Module size 6 genes
NF 0.51
%ile 66.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7792.10.98Zm.8576.1.A1_atBM074724caffeic acid 3-O-methyltransferase-4e-2At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)O.I.H.G.S.X.
0.6785.80.98Zm.10123.1.S1_atBM380717heat- and acid-stable phosphoprotein-3e-14At5g46020unknown proteinO.I.H.G.S.X.
0.6179.50.98Zm.522.1.S1_atAF200531.1cellulose synthase7-1e-38At2g21770CESA9 (CELLULOSE SYNTHASE A9)O.I.H.G.S.X.
0.3844.20.98Zm.9194.1.A1_atBM267243--1e+0At3g03456unknown proteinO.I.H.G.S.X.
0.3336.00.98Zm.4401.1.A1_atAY108702.1YGL010w-like protein-9e+0At5g59360unknown proteinO.I.H.G.S.X.
0.3029.80.98Zm.2602.1.S1_atAY109922.1hypothetical protein LOC100217277-1e-2At5g243403'-5' exonuclease domain-containing proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7188.20.95Zm.14983.1.S1_atAY270036.1Na+/H+ antiporter NHX1-1e-14At5g27150NHX1 (NA+/H+ EXCHANGER)O.I.H.G.S.X.
0.6785.80.97Zm.2308.1.A1_atBG841336hypothetical protein LOC100276079-2e-2At5g66005Expressed proteinO.I.H.G.S.X.
0.6179.50.96Zm.3607.1.A1_atAW017627IAA30 - auxin-responsive Aux/IAA family member-1e-14At4g14550IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)O.I.H.G.S.X.
0.6077.80.97ZmAffx.853.1.S1_atAI770653heavy metal-associated domain containing protein-2e-1At3g06130heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.5775.10.97Zm.2699.1.A1_atAW066891hypothetical protein LOC100193918-1e+1At5g16170unknown proteinO.I.H.G.S.X.
0.5571.60.97Zm.17251.1.A1_atBM336955--5e+0At1g43130LCV2 (LIKE COV 2)O.I.H.G.S.X.
0.5065.70.98Zm.16630.1.A1_atCF646437--1e+1At5g60580zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4658.40.96Zm.16476.1.A1_atCO527154lipid binding protein-2e+1At5g15600SP1L4 (SPIRAL1-LIKE4)O.I.H.G.S.X.
0.4455.70.97ZmAffx.1032.1.S1_atAI881679--3e+0At2g40650pre-mRNA splicing factor PRP38 family proteinO.I.H.G.S.X.
0.4455.70.97ZmAffx.213.1.A1_atAI670221--3e+0At2g32050cell cycle control protein-relatedO.I.H.G.S.X.
0.4352.80.96Zm.18208.1.A1_atBM338077--4e+0At3g45245-O.I.H.G.S.X.
0.4048.50.95Zm.17536.1.A1_atCK370765hypothetical protein LOC100273145-5e-1At2g46890oxidoreductase, acting on the CH-CH group of donorsO.I.H.G.S.X.
0.4048.50.96Zm.4036.1.A1_atCD994340tyrosine specific protein phosphatase family protein-1e-11At1g05000tyrosine specific protein phosphatase family proteinO.I.H.G.S.X.
0.4048.50.97Zm.17977.1.A1_atCK827616--5e-1At3g0963060S ribosomal protein L4/L1 (RPL4A)O.I.H.G.S.X.
0.4048.50.97Zm.10219.2.S1_a_atM95067.1hypothetical LOC542286-1e-7At1g25220ASB1 (ANTHRANILATE SYNTHASE BETA SUBUNIT 1)O.I.H.G.S.X.
0.3844.20.96Zm.5086.1.A1_atCF625592hypothetical protein LOC100276795-1e+0At5g08391unknown proteinO.I.H.G.S.X.
0.3844.20.96Zm.3558.1.A1_atCA402352--3e+0At1g68620hydrolaseO.I.H.G.S.X.
0.3641.30.97Zm.18268.1.S1_atAY111026.1Hypothetical LOC542182-2e-8At5g45290zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3641.30.97Zm.18122.1.S1_atCN844577hypothetical protein LOC100278956-5e+0At5g44540tapetum-specific protein-relatedO.I.H.G.S.X.
0.3538.90.95Zm.10405.1.S1_atAY108533.1PHD finger protein-1e-7At3g42790AL3 (ALFIN-LIKE 3)O.I.H.G.S.X.
0.3336.00.94Zm.3736.1.A1_atAY108005.1--1e+0At4g25225unknown proteinO.I.H.G.S.X.
0.3336.00.96Zm.18015.1.A1_atCF633784hypothetical protein LOC100277411-3e-2At5g51850unknown proteinO.I.H.G.S.X.
0.3336.00.96Zm.8683.1.A1_atBM266358hypothetical protein LOC100273977-4e+0At5g52605-O.I.H.G.S.X.
0.3336.00.97Zm.5753.1.A1_atAW066540smr domain containing protein-7e-1At1g50390fructokinase-relatedO.I.H.G.S.X.
0.3336.00.97Zm.44.1.S1_atD49475.1glutamic dehydrogenase1-9e-44At3g03910GDH3 (GLUTAMATE DEHYDROGENASE 3)O.I.H.G.S.X.
0.3336.00.97Zm.18362.1.A1_atCO523153hypothetical protein LOC100217038-9e-3At5g39590-O.I.H.G.S.X.
0.3131.60.96ZmAffx.775.1.A1_atAI746211S-ribonuclease binding protein SBP1-8e-1At4g32480unknown proteinO.I.H.G.S.X.
0.3131.60.97Zm.11667.1.A1_atCF633574hypothetical protein LOC100274234-4e-1At4g39630unknown proteinO.I.H.G.S.X.
0.3029.80.95Zm.3698.1.A1_atAI834031transposon protein-4e+0At5g06910ATJ6 (Arabidopsis J-domain protein 6)O.I.H.G.S.X.
0.3029.80.97ZmAffx.753.1.S1_atAI745901--8e-1At3g29633unknown proteinO.I.H.G.S.X.
0.3029.80.98Zm.6439.2.A1_atAI881500eucaryotic initiation factor7-7e-14At5g35620LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)O.I.H.G.S.X.
0.2928.10.97Zm.12431.1.S1_atAY106853.1hypothetical protein LOC100217105-4e+0At4g18400unknown proteinO.I.H.G.S.X.
0.2928.10.94Zm.1954.1.A1_atAY104136.1--1e+0At5g18748unknown proteinO.I.H.G.S.X.
0.2928.10.95Zm.8422.1.A1_atBM074069SCPL33-1e+0At5g61640PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1)O.I.H.G.S.X.
0.2928.10.97Zm.13542.1.S1_atAY108280.1Transcription factor MYB31-4e-24At4g38620MYB4O.I.H.G.S.X.
0.2828.10.96Zm.5277.1.A1_atAI619073--1e+0At4g39750F-box family protein-relatedO.I.H.G.S.X.
0.2724.60.94Zm.7476.1.A1_atBM078591--2e-3At4g29273LCR23 (Low-molecular-weight cysteine-rich 23)O.I.H.G.S.X.
0.2724.60.95ZmAffx.1222.1.S1_at11990232-114--1e+1At4g38370phosphoglycerate/bisphosphoglycerate mutase family proteinO.I.H.G.S.X.
0.2622.70.97Zm.16687.1.S1_atCF636696hypothetical protein LOC100194066-3e-3At5g07250ATRBL3 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 3)O.I.H.G.S.X.
0.2622.70.97Zm.16757.1.A1_atBM380106--3e-2At3g03660WOX11 (WUSCHEL related homeobox 11)O.I.H.G.S.X.
0.2622.70.98Zm.19158.2.S1_atBM073998thioredoxin F-type-3e-11At5g16400ATF2O.I.H.G.S.X.
0.2622.70.96Zm.17839.1.S1_atU12679.1glutathione S-transferase2-1e-1At4g02520ATGSTF2 (GLUTATHIONE S-TRANSFERASE PHI 2)O.I.H.G.S.X.
0.2521.30.95Zm.2586.1.A1_atU22433.1GTP binding protein-1e-75At4g17170RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C)O.I.H.G.S.X.
0.2521.30.97Zm.13700.1.S1_atCF634202hypothetical protein LOC100193445-5e-1At1g14990unknown proteinO.I.H.G.S.X.
0.2521.30.97Zm.2960.1.S1_atCF005604EMB1688-3e-13At1g67440emb1688 (embryo defective 1688)O.I.H.G.S.X.
0.2521.30.98Zm.18338.1.A1_atBM074037hypothetical protein LOC100193344-4e+0At2g27410unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.399.5GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
21.499.4GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.199.1GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.698.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.198.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.798.1GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.797.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.497.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.595.1GSM320464protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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