Co-expression analysis

Gene ID	Zm.8576.1.A1_at
Gene name	caffeic acid 3-O-methyltransferase
Homology with Arabidopsis	Similar to At5g54160: ATOMT1 (O-METHYLTRANSFERASE 1) (HF=4e-2)
Module size	6 genes
NF	0.51
%ile	66.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.1	0.98	Zm.8576.1.A1_at	BM074724	caffeic acid 3-O-methyltransferase	-	4e-2	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.10123.1.S1_at	BM380717	heat- and acid-stable phosphoprotein	-	3e-14	At5g46020	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.98	Zm.522.1.S1_at	AF200531.1	cellulose synthase7	-	1e-38	At2g21770	CESA9 (CELLULOSE SYNTHASE A9)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.98	Zm.9194.1.A1_at	BM267243	-	-	1e+0	At3g03456	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.98	Zm.4401.1.A1_at	AY108702.1	YGL010w-like protein	-	9e+0	At5g59360	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.98	Zm.2602.1.S1_at	AY109922.1	hypothetical protein LOC100217277	-	1e-2	At5g24340	3'-5' exonuclease domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
22.3	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.4	99.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.1	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1619682_x_at, orthologous to the query gene, Zm.8576.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	90.8	1619682_x_at	At5g54160	-	-	3e-45	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.57	79.8	1611528_at	At5g54160	hypothetical protein LOC100254781	-	1e+0	At5g45360	F-box family protein	O.I.	H.G.	S.X.	Please select
0.53	75.2	1613030_at	At5g54160	-	-	1e+0	At2g45450	ZPR1 (LITTLE ZIPPER 1)	O.I.	H.G.	S.X.	Please select
0.52	73.9	1619671_at	At5g54160	-	-	2e-15	At5g41760	nucleotide-sugar transporter family protein	O.I.	H.G.	S.X.	Please select
0.51	73.2	1619582_at	At5g54160	hypothetical protein LOC100257516	-	1e+0	At5g11330	monooxygenase family protein	O.I.	H.G.	S.X.	Please select
0.45	64.6	1617453_at	At5g54160	-	-	7e-1	At1g31812	ACBP6 (acyl-CoA-binding protein 6)	O.I.	H.G.	S.X.	Please select
0.44	64.1	1613876_at	At5g54160	-	-	3e-4	At1g09400	12-oxophytodienoate reductase, putative	O.I.	H.G.	S.X.	Please select
0.41	58.7	1606916_at	At5g54160	-	-	1e-1	At3g10640	VPS60.1	O.I.	H.G.	S.X.	Please select
0.40	57.7	1620272_at	At5g54160	hypothetical protein LOC100252883	-	2e+0	At2g37330	ALS3 (ALUMINUM SENSITIVE 3)	O.I.	H.G.	S.X.	Please select
0.39	54.9	1621701_at	At5g54160	hypothetical LOC100245420	-	1e+0	At5g38320	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	1614362_at	At5g54160	-	-	8e+0	At5g44574	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	1619350_at	At5g54160	-	-	5e+0	At5g06430	thioredoxin-related	O.I.	H.G.	S.X.	Please select
0.33	45.7	1607102_at	At5g54160	-	-	2e+0	At3g24506	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	1617497_at	At5g54160	hypothetical protein LOC100248145	-	4e-22	At1g04410	malate dehydrogenase, cytosolic, putative	O.I.	H.G.	S.X.	Please select
0.31	41.3	1620902_a_at	At5g54160	-	-	6e-1	At1g67210	proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	1609860_at	At5g54160	-	-	7e-3	At3g61900	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	1612870_s_at	At5g54160	hypothetical protein LOC100267310	-	3e+0	At2g18380	transcription factor	O.I.	H.G.	S.X.	Please select
0.31	41.3	1614348_at	At5g54160	similar to NADH dehydrogenase subunit I	-	1e-157	Atcg01100	-	O.I.	H.G.	S.X.	Please select
0.31	41.3	1619863_at	At5g54160	-	-	2e+0	At1g19930	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	1616436_at	At5g54160	-	-	5e+0	At4g13060	F-box family protein-related	O.I.	H.G.	S.X.	Please select
0.25	30.5	1609341_s_at	At5g54160	hypothetical protein LOC100265359	-	2e-3	At5g40630	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	1610687_at	At5g54160	-	-	1e-35	At2g37680	-	O.I.	H.G.	S.X.	Please select
0.20	22.4	1608221_at	At5g54160	-	-	4e+0	At5g39330	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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