Co-expression analysis

Gene ID	Zm.8576.1.A1_at
Gene name	caffeic acid 3-O-methyltransferase
Homology with Arabidopsis	Similar to At5g54160: ATOMT1 (O-METHYLTRANSFERASE 1) (HF=4e-2)
Module size	6 genes
NF	0.51
%ile	66.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.1	0.98	Zm.8576.1.A1_at	BM074724	caffeic acid 3-O-methyltransferase	-	4e-2	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.10123.1.S1_at	BM380717	heat- and acid-stable phosphoprotein	-	3e-14	At5g46020	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.98	Zm.522.1.S1_at	AF200531.1	cellulose synthase7	-	1e-38	At2g21770	CESA9 (CELLULOSE SYNTHASE A9)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.98	Zm.9194.1.A1_at	BM267243	-	-	1e+0	At3g03456	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.98	Zm.4401.1.A1_at	AY108702.1	YGL010w-like protein	-	9e+0	At5g59360	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.98	Zm.2602.1.S1_at	AY109922.1	hypothetical protein LOC100217277	-	1e-2	At5g24340	3'-5' exonuclease domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
22.3	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.4	99.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.1	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.3984.1.A1_at, orthologous to the query gene, Zm.8576.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.85	97.2	Ptp.3984.1.A1_at	At5g54160	beta-alanine n-methyltransferase related	-	5e-20	At3g53140	O-diphenol-O-methyl transferase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.50986.1.S1_at	At5g54160	hypothetical protein	-	1e-11	At2g22080	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.5423.4.S1_at	At5g54160	hypothetical protein	-	2e-13	At5g16660	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.35076.1.A1_s_at	At5g54160	hypothetical protein	-	1e-3	At1g31650	ROPGEF14	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	Ptp.1743.1.A1_a_at	At5g54160	hypothetical protein	-	3e-45	At4g26300	emb1027 (embryo defective 1027)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.5999.1.S1_s_at	At5g54160	hypothetical protein	-	3e-14	At5g42720	glycosyl hydrolase family 17 protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.41412.1.A1_at	At5g54160	hypothetical protein	-	3e-51	At5g48220	indole-3-glycerol phosphate synthase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.153700.1.A1_at	At5g54160	hypothetical protein	-	2e-92	At5g56130	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.2543.1.S1_at	At5g54160	hypothetical protein	-	8e-10	At1g04190	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.215457.1.S1_at	At5g54160	hypothetical protein	-	6e-25	At5g38380	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.145397.1.A1_s_at	At5g54160	hypothetical protein	-	1e-35	At4g35450	AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.212893.1.S1_at	At5g54160	chromatin remodeling complex subunit	-	3e-3	At2g47620	ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	Ptp.6732.1.S1_at	At5g54160	histone 2	-	2e-27	At3g54560	HTA11	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	Ptp.8141.1.S1_s_at	At5g54160	hypothetical protein	-	2e-83	At5g08290	YLS8	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	Ptp.8141.1.S1_at	At5g54160	hypothetical protein	-	2e-83	At5g08290	YLS8	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.26440.1.S1_at	At5g54160	hypothetical protein	-	4e-39	At2g37340	RSZ33	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	Ptp.442.1.S1_at	At5g54160	-	-	2e-1	At3g04610	FLK (flowering locus KH domain)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	Ptp.4240.2.A1_a_at	At5g54160	hypothetical protein	-	2e-27	At3g18880	ribosomal protein S17 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage