Co-expression analysis

Gene ID Zm.8576.1.A1_at
Gene name caffeic acid 3-O-methyltransferase
Homology with ArabidopsisSimilar to At5g54160: ATOMT1 (O-METHYLTRANSFERASE 1) (HF=4e-2)
Module size 6 genes
NF 0.51
%ile 66.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7792.10.98Zm.8576.1.A1_atBM074724caffeic acid 3-O-methyltransferase-4e-2At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)O.I.H.G.S.X.
0.6785.80.98Zm.10123.1.S1_atBM380717heat- and acid-stable phosphoprotein-3e-14At5g46020unknown proteinO.I.H.G.S.X.
0.6179.50.98Zm.522.1.S1_atAF200531.1cellulose synthase7-1e-38At2g21770CESA9 (CELLULOSE SYNTHASE A9)O.I.H.G.S.X.
0.3844.20.98Zm.9194.1.A1_atBM267243--1e+0At3g03456unknown proteinO.I.H.G.S.X.
0.3336.00.98Zm.4401.1.A1_atAY108702.1YGL010w-like protein-9e+0At5g59360unknown proteinO.I.H.G.S.X.
0.3029.80.98Zm.2602.1.S1_atAY109922.1hypothetical protein LOC100217277-1e-2At5g243403'-5' exonuclease domain-containing proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.399.5GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
21.499.4GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.199.1GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.698.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.198.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.798.1GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.797.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.497.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.595.1GSM320464protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g54160, orthologous to the query gene, Zm.8576.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At5g54160835504ATOMT1 (O-METHYLTRANSFERASE 1)A caffeic acid/5-hydroxyferulic acid O-methyltransferase. Interacts with 14-4-3 proteins in yeast 2 hybrid assay. AtOMT1 (At5g54160) encodes a flavonol 3-O-methyltransferase that is highly active towards quercetin and myricetin. The substrate specificity identifies the enzyme as flavonol 3-methyltransferase which replaces the former annotation of the gene to encode a caffeic acid/5-hydroxyferulic acid O-methyltransferaseO.I.H.G.S.X.
0.7586.9At4g34050829551caffeoyl-CoA 3-O-methyltransferase, putativeF:caffeoyl-CoA O-methyltransferase activity;P:coumarin biosynthetic process, response to cadmium ion;C:cytosol;BOPMFAO.I.H.G.S.X.
0.6781.6At1g224108388472-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putativeF:3-deoxy-7-phosphoheptulonate synthase activity;P:aromatic amino acid family biosynthetic process;C:membrane;OBPFO.I.H.G.S.X.
0.6781.6At2g30490817599C4H (CINNAMATE-4-HYDROXYLASE)Encodes a cinnamate-4-hydroxylase.O.I.H.G.S.X.
0.6176.7At5g48930834951HCT (HYDROXYCINNAMOYL-COA SHIKIMATE/QUINATE HYDROXYCINNAMOYL TRANSFERASE)At5g48930 has been shown to encode for the hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase (HCT) both synthesizing and catabolizing the hydroxycinnamoylesters (coumaroyl/caffeoyl shikimate and quinate) involved in the phenylpropanoid pathway. Influence on the accumulation of flavonoids which in turn inhibit auxin transport and reduce plant growth.O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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