Co-expression analysis

Gene ID	Zm.8551.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g57290: 60S acidic ribosomal protein P3 (RPP3B) (HF=2e+0)
Module size	6 genes
NF	0.51
%ile	65.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.2	0.97	Zm.8551.1.A1_at	BM333970	-	-	2e+0	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.97	Zm.1359.1.S1_at	L20139.1	male gametophyte-specific2	-	3e-6	At3g01270	pectate lyase family protein	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.97	Zm.16049.2.A1_at	CF042888	-	-	3e-4	At5g03850	40S ribosomal protein S28 (RPS28B)	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.97	Zm.7976.1.S1_at	BM080696	hypothetical protein LOC100217261	-	2e-46	At5g37680	ATARLA1A (ADP-ribosylation factor-like A1A)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.97	Zm.17581.1.S1_at	CK371654	hypothetical protein LOC100216838	-	2e+0	At1g68540	oxidoreductase family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.5960.1.A1_at	AI665953	hypothetical protein LOC100277799	-	1e+1	At5g65158	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
23.3	99.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.8	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.6	99.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.2	99.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.9	99.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage