Co-expression analysis

Gene ID Zm.8547.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g09380: - (HF=5e+0)
Module size 21 genes
NF 0.56
%ile 74.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8696.30.93Zm.8547.1.A1_atBM338859--5e+0At3g09380-O.I.H.G.S.X.
0.6785.80.96Zm.4810.1.A1_atAI745785--5e+0At3g60390HAT3 (HOMEOBOX-LEUCINE ZIPPER PROTEIN 3)O.I.H.G.S.X.
0.6785.80.96Zm.14337.1.S1_atAY107073.1hypothetical protein LOC100191876-2e+0At5g12990CLE40 (CLAVATA3/ESR-RELATED 40)O.I.H.G.S.X.
0.6785.80.96Zm.5277.1.S1_atAI619073--1e+0At4g39750F-box family protein-relatedO.I.H.G.S.X.
0.6582.10.96Zm.481.1.S1_atAF227632.1mismatch binding protein Mus3-2e-8At4g02070MSH6 (MUTS HOMOLOG 6)O.I.H.G.S.X.
0.6381.10.96Zm.5231.1.S1_atAW059997--2e-1At2g44950HUB1 (HISTONE MONO-UBIQUITINATION 1)O.I.H.G.S.X.
0.6279.80.93Zm.15961.1.S1_x_atCK369834--4e-1At3g19920unknown proteinO.I.H.G.S.X.
0.6179.50.96Zm.1511.1.S1_atCO532736--5e+0At5g08060unknown proteinO.I.H.G.S.X.
0.6179.50.97Zm.7386.1.S1_atBM334549DNA binding protein-1e-1At3g50330HEC2 (HECATE 2)O.I.H.G.S.X.
0.6077.80.96Zm.675.2.S1_atAF332178.1beta-expansin 5-3e-1At4g19270unknown proteinO.I.H.G.S.X.
0.6077.80.94Zm.3313.1.A1_a_atCK985862--6e+0At5g25840unknown proteinO.I.H.G.S.X.
0.5674.40.97Zm.5026.1.A1_atAI600450--4e+0At5g63740zinc finger protein-relatedO.I.H.G.S.X.
0.5571.60.96Zm.7385.1.A1_atCF626198--7e+0At5g19473-O.I.H.G.S.X.
0.5571.60.95Zm.3756.1.S1_atAY110095.1--1e-1At4g13850GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)O.I.H.G.S.X.
0.5369.10.96Zm.7380.1.S1_atBM078135hypothetical protein LOC100280093-6e-1At1g51070basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.4861.30.97Zm.3157.4.A1_atAI734519--5e-1At1g09220pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.4861.30.95Zm.3756.1.A1_atBE025409--8e-3At2g24520AHA5 (Arabidopsis H(+)-ATPase 5)O.I.H.G.S.X.
0.4759.90.94Zm.3006.1.A1_a_atBG873873--2e-2At3g21352unknown proteinO.I.H.G.S.X.
0.3538.90.95ZmAffx.462.1.S1_atAI677305--3e+0At4g22870leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putativeO.I.H.G.S.X.
0.3437.20.93Zm.56.1.S1_atU12233.1GTP binding protein2-4e-9At4g34460AGB1 (GTP BINDING PROTEIN BETA 1)O.I.H.G.S.X.
0.3233.40.94Zm.10774.1.A1_atCD972574hypothetical protein LOC100193506-6e-1At5g14240-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
29.199.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
29.199.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
23.799.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.998.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.398.9GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.598.7GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.498.4GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.198.4GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.997.9GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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