Co-expression analysis

Gene ID Zm.8505.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At1g51870: protein kinase family protein (HF=1e-4)
Module size 38 genes
NF 0.46
%ile 55.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9399.30.96Zm.8505.1.A1_atAY107567.1--1e-4At1g51870protein kinase family proteinO.I.H.G.S.X.
0.6381.10.96Zm.18651.1.A1_atCO521320hypothetical protein LOC100193552-2e+1At4g18510CLE2 (CLAVATA3/ESR-RELATED)O.I.H.G.S.X.
0.6279.80.97Zm.12595.1.S1_atBG266819--1e-7At1g09620ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide bindingO.I.H.G.S.X.
0.5775.10.97Zm.18474.1.A1_atCO531196hypothetical protein LOC100192651-6e+0At5g61997unknown proteinO.I.H.G.S.X.
0.5674.40.97Zm.2678.1.A1_atBM339111hypothetical protein LOC100193236-2e-1At1g05180AXR1 (AUXIN RESISTANT 1)O.I.H.G.S.X.
0.5571.60.97Zm.7399.1.S1_atAY106106.1hypothetical protein LOC100274088-1e-79At3g07980MAPKKK6O.I.H.G.S.X.
0.5469.80.97Zm.15155.1.A1_atCO526660hypothetical protein LOC100193626-2e+0At3g27200plastocyanin-like domain-containing proteinO.I.H.G.S.X.
0.5369.10.97Zm.12589.1.S1_a_atAY389497.1hypothetical protein LOC100193645 /// ribosomal protein S6 kinase-4e-12At3g08720S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2)O.I.H.G.S.X.
0.5267.30.97Zm.7045.1.A1_atAY108667.1protein pob-2e-37At4g12590unknown proteinO.I.H.G.S.X.
0.5166.40.97Zm.2894.1.A1_atAY104773.1--1e-45At3g50500SNRK2.2 (SNF1-RELATED PROTEIN KINASE 2.2)O.I.H.G.S.X.
0.5166.40.97Zm.4187.1.A1_atAY105088.1--5e-1At5g45350proline-rich family proteinO.I.H.G.S.X.
0.5065.70.97Zm.14293.1.S1_atAY107455.1hypothetical protein LOC100191275-9e+0At5g06710HAT14 (HOMEOBOX FROM ARABIDOPSIS THALIANA)O.I.H.G.S.X.
0.4961.90.97Zm.19049.1.A1_atBG267149hypothetical protein LOC100274230-4e-5At4g31550WRKY11O.I.H.G.S.X.
0.4861.30.97Zm.12269.1.A1_atCF646230hypothetical protein LOC100193070-7e+0At3g14420(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeO.I.H.G.S.X.
0.4861.30.98Zm.12736.2.A1_atAI881252--5e+0At4g25720QC (GLUTAMINYL CYCLASE)O.I.H.G.S.X.
0.4759.90.97Zm.12681.1.S1_atCA399688hypothetical protein LOC100278755-2e+0At5g65670IAA9 (INDOLE-3-ACETIC ACID INDUCIBLE 9)O.I.H.G.S.X.
0.4759.90.96Zm.6045.4.S1_atAY105966.1hypothetical protein LOC100191419-5e-4At1g51200zinc finger (AN1-like) family proteinO.I.H.G.S.X.
0.4658.40.97Zm.19138.1.S1_atCO525589hypothetical protein LOC100277966-5e-1At2g46300-O.I.H.G.S.X.
0.4556.40.98Zm.17172.1.A1_atAI664919--2e+0At1g55675unknown proteinO.I.H.G.S.X.
0.4455.70.97Zm.2713.2.S1_a_atAI881541--1e-30At5g60790ATGCN1O.I.H.G.S.X.
0.4455.70.97Zm.8193.1.A1_atBM338936--7e-15At1g34020transporter-relatedO.I.H.G.S.X.
0.4455.70.97Zm.15604.1.S1_atCD433931subtilisin-chymotrypsin inhibitor CI-1B-5e+0At5g27440unknown proteinO.I.H.G.S.X.
0.4352.80.97Zm.13256.1.A1_atAF058709.1RNA polymerase sigma factor 2-3e-6At1g64860SIGA (SIGMA FACTOR A)O.I.H.G.S.X.
0.4149.70.97Zm.10287.1.S1_atBM736731--1e+0At2g45250unknown proteinO.I.H.G.S.X.
0.4048.50.97ZmAffx.601.1.A1_atAI715029--8e-1At1g35430unknown proteinO.I.H.G.S.X.
0.4048.50.97Zm.12433.1.S1_s_atAY105016.1tyrosyl-tRNA synthetase-4e-18At2g33840tRNA synthetase class I (W and Y) family proteinO.I.H.G.S.X.
0.4048.50.97Zm.18125.1.S1_atCN844337--4e-1At3g47380invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.4048.50.97Zm.11598.1.A1_atBM379212--1e+0At5g11990proline-rich family proteinO.I.H.G.S.X.
0.3945.60.97Zm.18873.1.S1_atAY103904.1programmed cell death protein 2-2e-3At4g02220zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing proteinO.I.H.G.S.X.
0.3742.30.97Zm.10393.1.S1_atAI676981--2e+0At5g11425unknown proteinO.I.H.G.S.X.
0.3742.30.97Zm.9389.3.A1_atCF633932--4e+0At5g43410ethylene-responsive factor, putativeO.I.H.G.S.X.
0.3742.30.97Zm.17179.1.A1_atCK368850--9e-14At1g27740basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.3641.30.97Zm.11992.1.A1_atBM382475--3e+0At5g41614unknown proteinO.I.H.G.S.X.
0.3538.90.97Zm.2906.1.S1_atAY110115.1somatic embryogenesis receptor-like kinase2-2e-51At1g34210SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)O.I.H.G.S.X.
0.3538.90.97ZmAffx.89.1.S1_atAI665353--1e+1At5g20560beta-1,3-glucanase, putativeO.I.H.G.S.X.
0.3233.40.97Zm.18281.1.S1_atBG840860hypothetical protein LOC100277869-5e-1At1g56530hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.3029.80.97Zm.12433.1.S1_atAY105016.1tyrosyl-tRNA synthetase-4e-18At2g33840tRNA synthetase class I (W and Y) family proteinO.I.H.G.S.X.
0.2724.60.97Zm.4762.1.A1_atBG874087--2e-6At1g25540PFT1 (PHYTOCHROME AND FLOWERING TIME 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.095.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.895.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.895.5GSM205366B73 13 DAP endosperm tissue biological replicate 1GSE8275Non-additive and imprinted gene expression in hybrid maize endosperm_13DAPLink to GEO
3.595.1GSM205370B73 13 DAP endosperm tissue biological replicate 2GSE8275Non-additive and imprinted gene expression in hybrid maize endosperm_13DAPLink to GEO
3.294.5GSM205424Mo17 19 DAP endosperm tissue biological replicate 2GSE8278Non-additive and imprinted gene expression in hybrid maize endosperm_19DAPLink to GEO
3.094.0GSM205420Mo17 19 DAP endosperm tissue biological replicate 1GSE8278Non-additive and imprinted gene expression in hybrid maize endosperm_19DAPLink to GEO
3.094.0GSM205422Mo17xB73 19 DAP endosperm tissue biological replicate 1GSE8278Non-additive and imprinted gene expression in hybrid maize endosperm_19DAPLink to GEO
3.094.0GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.094.0GSM205368B73xMo17 13 DAP endosperm tissue biological replicate 1GSE8275Non-additive and imprinted gene expression in hybrid maize endosperm_13DAPLink to GEO
2.993.8GSM205376B73xMo17 13 DAP endosperm tissue biological replicate 3GSE8275Non-additive and imprinted gene expression in hybrid maize endosperm_13DAPLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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