Co-expression analysis

Gene ID	Zm.8484.1.A1_at
Gene name	hypothetical protein LOC100279952
Homology with Arabidopsis	Similar to At5g42100: ATBG_PAP (HF=9e-2)
Module size	9 genes
NF	0.50
%ile	64.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	55.7	0.97	Zm.8484.1.A1_at	CD974829	hypothetical protein LOC100279952	-	9e-2	At5g42100	ATBG_PAP	O.I.	H.G.	S.X.	Please select
0.75	90.8	0.97	Zm.15848.1.A1_a_at	BQ539460	-	-	1e-3	At5g07090	40S ribosomal protein S4 (RPS4B)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.1585.1.S1_at	CO519290	profilin 2	-	6e-16	At4g29340	PRF4 (PROFILIN 4)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.2807.1.A1_at	BM334793	zinc-finger protein 1	-	7e-1	At5g57345	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	Zm.6405.2.A1_a_at	AI881398	LOL1	-	2e-1	At1g32540	LOL1 (LSD ONE LIKE 1)	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.98	Zm.819.1.S1_at	H35893	-	-	3e-1	At4g09030	AGP10 (ARABINOGALACTAN PROTEIN 10)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.97	Zm.14934.1.A1_at	CK986163	CHCH domain containing protein	-	1e+0	At3g09032	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.2042.1.A1_a_at	AY104437.1	protein arginine N-methyltransferase 1	-	2e-6	At4g29510	PRMT11 (ARGININE METHYLTRANSFERASE 11)	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.98	Zm.12394.1.S1_at	AW519964	hypothetical protein LOC100279308	-	2e-8	At2g40550	ETG1 (E2F TARGET GENE 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.3	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.6	92.9	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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