Co-expression analysis

Gene ID	Zm.8401.1.A1_a_at
Gene name	hypothetical protein LOC100278973
Homology with Arabidopsis	Similar to At3g07910: - (HF=8e-2)
Module size	11 genes
NF	0.55
%ile	72.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.47	59.9	0.96	Zm.8401.1.A1_a_at	CF008000	hypothetical protein LOC100278973	-	8e-2	At3g07910	-	O.I.	H.G.	S.X.	Please select
0.78	92.5	0.97	Zm.3358.2.S1_at	AY105740.1	-	-	7e+0	At2g44420	protein N-terminal asparagine amidohydrolase family protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	Zm.5022.1.S1_at	BM074052	hypothetical protein LOC100279516	-	1e-17	At1g67800	copine-related	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.6149.1.A1_at	CA399198	omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2	-	9e-1	At5g43070	WPP1 (WPP domain protein 1)	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.98	Zm.13016.1.A1_at	CA403346	hypothetical protein LOC100277160	-	2e+0	At1g22160	senescence-associated protein-related	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.97	Zm.18351.1.S1_at	CO529439	-	-	2e+0	At2g21140	ATPRP2 (PROLINE-RICH PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.14349.1.S1_at	CO532249	hypothetical protein LOC100272339	-	3e+0	At5g16010	3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.97	Zm.18352.1.S1_at	CO527044	glucan endo-1,3-beta-glucosidase, acidic isoform	-	1e+1	At5g62470	MYB96 (myb domain protein 96)	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.97	Zm.7727.4.S1_s_at	CF972403	polyubiquitin containing 7 ubiquitin monomers /// ubiquitin /// polyubiquitin	-	2e-102	At4g05320	UBQ10 (POLYUBIQUITIN 10)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.97	Zm.5165.1.A1_at	AI715001	gpm6 protein	-	5e+0	At5g03850	40S ribosomal protein S28 (RPS28B)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.98	Zm.5288.1.S1_at	CA828006	-	-	2e+0	At1g11980	RUB3 (UBIQUITIN-RELATED PROTEIN 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.7	98.5	GSM162265	Wild type 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
7.8	97.9	GSM162264	Mutant 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
6.2	97.4	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
3.6	95.2	GSM205434	Mo17xB73 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.5	95.1	GSM205422	Mo17xB73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.3	94.7	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
2.8	93.5	GSM205433	B73 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.4	92.2	GSM205427	Mo17xB73 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.4	92.2	GSM205421	B73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
2.2	91.3	GSM205425	B73 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage