Co-expression analysis

Gene ID Zm.8348.1.A1_at
Gene name Hypothetical protein LOC100193915
Homology with ArabidopsisSimilar to At3g20750: zinc finger (GATA type) family protein (HF=3e-1)
Module size 6 genes
NF 0.06
%ile 3.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4759.90.87Zm.8348.1.A1_atBM073795Hypothetical protein LOC100193915-3e-1At3g20750zinc finger (GATA type) family proteinO.I.H.G.S.X.
0.4759.90.86Zm.17272.1.S1_atCK371238--8e-6At2g41190amino acid transporter family proteinO.I.H.G.S.X.
0.4455.70.87Zm.12177.1.A1_atBM380114hypothetical protein LOC100193797-3e-1At2g05752unknown proteinO.I.H.G.S.X.
0.104.60.89Zm.17615.1.A1_atCK347383protein binding protein-2e+0At2g20620unknown proteinO.I.H.G.S.X.
0.062.30.89Zm.10062.1.A1_atBM378648hypothetical protein LOC100280233-4e-4At5g16000NIK1 (NSP-INTERACTING KINASE 1)O.I.H.G.S.X.
0.020.70.87Zm.18097.1.A1_atCF635499--8e-2At1g72230plastocyanin-like domain-containing proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4048.50.80Zm.1848.1.A1_atAY106826.1--4e-1At1g06280LBD2 (LOB DOMAIN-CONTAINING PROTEIN 2)O.I.H.G.S.X.
0.3844.20.89Zm.8037.1.A1_atBM073083--1e+0At5g58580ATL63 (ARABIDOPSIS TÓO.I.H.G.S.X.
0.2521.30.86Zm.4265.1.A1_atCA402796--2e+0At1g12710AtPP2-A12 (Phloem protein 2-A12)O.I.H.G.S.X.
0.2216.90.79ZmAffx.194.1.A1_atAI668447hypothetical protein LOC100194250-3e+0At4g36660unknown proteinO.I.H.G.S.X.
0.1811.60.83Zm.5885.1.A1_atCF634075hypothetical protein LOC100278710-1e+0At5g51860MADS-box protein (AGL72)O.I.H.G.S.X.
0.1811.60.89Zm.9875.1.A1_atBM332348--4e+0At5g10000ATFD4 (ferredoxin 4)O.I.H.G.S.X.
0.136.80.82Zm.5785.1.S1_atBM269195S-adenosylmethionine synthetase 1-1e-86At1g02500SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1)O.I.H.G.S.X.
0.125.90.78Zm.18343.1.S1_atCA399699mitochondrial glycoprotein-2e+0At2g21620RD2O.I.H.G.S.X.
0.125.90.80Zm.12124.1.A1_atBU098363hypothetical protein LOC100274757-1e+0At4g17585unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.795.4GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.695.2GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.194.3GSM202297Mo17 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO
3.094.0GSM202303Mo17 immature ear tissue, biological replicate 3GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO
3.094.0GSM202298B73 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO
2.993.8GSM202290Mo17 immature ear tissue, biological replicate 1GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO
2.893.5GSM202295Mo17xB73 immature ear tissue, biological replicate 1GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO
2.893.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.793.2GSM202302B73xMo17 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO
2.793.2GSM206310Lower pulvinus 60 min polysomal RNA biorep 1GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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