Co-expression analysis

Gene ID	Zm.8348.1.A1_at
Gene name	Hypothetical protein LOC100193915
Homology with Arabidopsis	Similar to At3g20750: zinc finger (GATA type) family protein (HF=3e-1)
Module size	6 genes
NF	0.06
%ile	3.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.47	59.9	0.87	Zm.8348.1.A1_at	BM073795	Hypothetical protein LOC100193915	-	3e-1	At3g20750	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.86	Zm.17272.1.S1_at	CK371238	-	-	8e-6	At2g41190	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.87	Zm.12177.1.A1_at	BM380114	hypothetical protein LOC100193797	-	3e-1	At2g05752	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	4.6	0.89	Zm.17615.1.A1_at	CK347383	protein binding protein	-	2e+0	At2g20620	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.89	Zm.10062.1.A1_at	BM378648	hypothetical protein LOC100280233	-	4e-4	At5g16000	NIK1 (NSP-INTERACTING KINASE 1)	O.I.	H.G.	S.X.	Please select
0.02	0.7	0.87	Zm.18097.1.A1_at	CF635499	-	-	8e-2	At1g72230	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	95.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.1	94.3	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.0	94.0	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.0	94.0	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.9	93.8	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.8	93.5	GSM202295	Mo17xB73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.8	93.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7	93.2	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.7	93.2	GSM206310	Lower pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

A co-expression module including the barley gene, Contig12720_at, orthologous to the query gene, Zm.8348.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.54	70.3	Contig12720_at	At3g20750	-	-	7e+0	At5g38180	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.80	92.5	Contig1364_at	At3g20750	-	-	4e-25	At3g61110	ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)	O.I.	H.G.	S.X.	Please select
0.71	87.1	Contig742_at	At3g20750	-	-	4e-3	At1g48920	ATNUC-L1	O.I.	H.G.	S.X.	Please select
0.61	78.7	Contig14007_at	At3g20750	-	-	2e-1	At2g17780	MCA2 (mid1-complementing activity 2)	O.I.	H.G.	S.X.	Please select
0.61	78.7	rbags14j23_s_at	At3g20750	-	-	6e-1	At3g53668	CPuORF51 (Conserved peptide upstream open reading frame 51)	O.I.	H.G.	S.X.	Please select
0.57	74.9	Contig7625_at	At3g20750	-	-	4e-1	At5g36659	-	O.I.	H.G.	S.X.	Please select
0.54	70.3	Contig23795_at	At3g20750	-	-	1e+1	At5g49220	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	Contig12544_at	At3g20750	-	-	2e+1	At5g03100	F-box family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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