Co-expression analysis

Gene ID	Zm.8268.1.S1_at
Gene name	thioredoxin M-type
Homology with Arabidopsis	Similar to At5g39950: ATTRX2 (THIOREDOXIN 2) (HF=1e-1)
Module size	17 genes
NF	0.40
%ile	45.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	94.3	0.97	Zm.8268.1.S1_at	CK826607	thioredoxin M-type	-	1e-1	At5g39950	ATTRX2 (THIOREDOXIN 2)	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.97	Zm.6560.1.S1_at	Z29518.1	phospholipid synthesis1	-	8e-35	At3g57650	LPAT2	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.19116.1.A1_at	BM378409	-	-	2e-7	At4g33520	PAA1 (P-TYPE ATP-ASE 1)	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.97	Zm.4795.2.A1_at	AI740164	-	-	2e-1	At4g28703	-	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.98	Zm.5646.2.A1_x_at	AW257823	hypothetical protein LOC100191650	-	3e-41	At1g04750	VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.97	Zm.12527.1.A1_at	CF014227	hypothetical protein LOC100192918	-	2e-5	At5g18640	lipase class 3 family protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.97	Zm.14349.1.S1_at	CO532249	hypothetical protein LOC100272339	-	3e+0	At5g16010	3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.97	Zm.5959.1.A1_at	AI665952	-	-	1e-6	At4g30720	electron carrier/ oxidoreductase	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.96	Zm.12817.1.A1_at	CD446526	-	-	7e+0	At5g16486	-	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.97	Zm.6876.1.S1_at	AI065530	hypothetical protein LOC100193891	-	1e-7	At1g30820	CTP synthase, putative / UTP--ammonia ligase, putative	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.97	Zm.5971.1.A1_at	AI665982	-	-	1e+1	At5g47320	RPS19 (RIBOSOMAL PROTEIN S19)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.98	Zm.16836.1.A1_at	CF629974	hypothetical protein LOC100193667	-	7e-2	At1g80400	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.97	Zm.7012.7.A1_a_at	AI881466	ribosomal protein S8	-	1e-55	At5g59240	40S ribosomal protein S8 (RPS8B)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.98	Zm.13835.1.S1_at	CO518326	hypothetical protein LOC100193923	-	2e+0	At1g27640	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.97	Zm.6558.1.S1_at	AF073329.1	eukaryotic initiation factor3	-	1e-10	At4g11420	EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A)	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.98	Zm.7644.2.S1_x_at	BM341428	-	-	4e+0	At5g23760	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.97	Zm.5656.1.A1_at	BG837879	PAS2	-	2e-13	At5g10480	PAS2 (PASTICCINO 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.1	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM206332	Lower pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.8	97.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM206308	Lower pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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