Co-expression analysis

Gene ID	Zm.8204.1.A1_at
Gene name	hypothetical protein LOC100193193
Homology with Arabidopsis	Similar to At3g02600: LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) (HF=5e-5)
Module size	7 genes
NF	0.26
%ile	21.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.1	0.74	Zm.8204.1.A1_at	BM073273	hypothetical protein LOC100193193	-	5e-5	At3g02600	LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.80	Zm.3079.1.A1_at	AW091508	-	-	5e-1	At1g37007	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.83	Zm.18984.1.A1_at	CO518220	hypothetical protein LOC100279220	-	2e+0	At3g13140	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.86	Zm.18470.1.A1_at	CO520498	hypothetical protein LOC100279437	-	7e+0	At5g26848	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.79	Zm.15439.1.A1_at	CD219438	-	-	3e-3	At2g31820	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.15	8.6	0.80	Zm.10896.1.A1_at	AY106661.1	-	-	2e-1	At2g23920	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.86	Zm.11831.1.S1_a_at	CA401860	glucan endo-1,3-beta-glucosidase 6	-	7e-5	At5g58090	glycosyl hydrolase family 17 protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.4	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.2	91.3	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage