| VF | %ile | CC | Gene ID | Repr. ID | Gene name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
| 0.98 | 100.0 | 0.99 | Zm.82.1.S1_at | X57276.1 | colored plant1 | - | 2e-2 | At1g63650 | EGL3 (ENHANCER OF GLABRA 3) | O.I. | H.G. | S.X. | |
| 0.61 | 79.5 | 0.99 | ZmAffx.930.1.A1_at | AI795480 | - | - | 9e+0 | Atmg01210 | - | O.I. | H.G. | S.X. | |
| 0.59 | 76.1 | 0.99 | Zm.16775.1.A1_at | CF638158 | hypothetical protein LOC100274644 | - | 7e-3 | At5g49970 | ATPPOX (A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5'-PHOSPHATE OXIDASE) | O.I. | H.G. | S.X. | |
| 0.56 | 74.4 | 0.99 | ZmAffx.483.1.A1_at | AI691297 | hypothetical protein LOC100279915 | - | 1e+1 | At5g59870 | HTA6 | O.I. | H.G. | S.X. | |
| 0.52 | 67.3 | 0.99 | Zm.2800.1.A1_at | BG842849 | hypothetical protein LOC100193119 | - | 6e-11 | At3g09100 | mRNA capping enzyme family protein | O.I. | H.G. | S.X. | |
| 0.42 | 51.3 | 0.99 | Zm.1089.1.A1_at | CF628396 | hypothetical protein LOC100280051 | - | 7e+0 | At5g42850 | - | O.I. | H.G. | S.X. | |
| 0.35 | 38.9 | 0.99 | | | - | - | | | | O.I. | H.G. | S.X. | |
| 0.38 | 44.2 | 0.99 | Zm.11660.1.A1_at | BM379753 | - | - | 2e-9 | At5g36880 | acetyl-CoA synthetase, putative / acetate-CoA ligase, putative | O.I. | H.G. | S.X. | |
| 0.36 | 41.3 | 0.99 | Zm.12460.1.A1_at | AY104812.1 | - | - | 2e+1 | At5g10430 | AGP4 (ARABINOGALACTAN PROTEIN 4) | O.I. | H.G. | S.X. | |
| 0.36 | 41.3 | 0.99 | ZmAffx.1089.1.A1_at | AW052986 | hydrolase | - | 3e+0 | At2g43080 | AT-P4H-1 (A. THALIANA P4H ISOFORM 1) | O.I. | H.G. | S.X. | |
| 0.35 | 38.9 | 0.99 | Zm.2914.1.S1_at | AW091221 | - | - | 4e-1 | At1g23410 | ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA) | O.I. | H.G. | S.X. | |
| 0.35 | 38.9 | 0.99 | ZmAffx.108.1.S1_at | AI665554 | Hypothetical protein LOC100191707 | - | 8e-1 | At5g39640 | unknown protein | O.I. | H.G. | S.X. | |
| 0.35 | 38.9 | 0.99 | Zm.382.2.A1_at | AY109511.1 | Leucine-rich repeat transmembrane protein kinase 2 | - | 1e-22 | At3g14350 | SRF7 (STRUBBELIG-RECEPTOR FAMILY 7) | O.I. | H.G. | S.X. | |
| 0.35 | 38.9 | 0.99 | Zm.7016.1.A1_a_at | AY103859.1 | hypothetical protein LOC100275203 /// hypothetical protein LOC100276238 | - | 3e-1 | At5g44610 | MAP18 (Microtubule-associated Protein 18) | O.I. | H.G. | S.X. | |
| 0.35 | 38.9 | 0.99 | | | - | - | | | | O.I. | H.G. | S.X. | |
| 0.34 | 37.2 | 0.99 | Zm.4814.3.A1_at | CD440511 | elongation factor 1-beta | - | 2e-10 | At1g30230 | elongation factor 1-beta / EF-1-beta | O.I. | H.G. | S.X. | |
| 0.32 | 33.4 | 0.99 | Zm.13412.2.S1_at | AY112654.1 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imi dazole-4-carboxamide isomerase | - | 1e-1 | At4g36610 | hydrolase, alpha/beta fold family protein | O.I. | H.G. | S.X. | |
| 0.32 | 33.4 | 0.99 | ZmAffx.1103.1.A1_at | AW191100 | - | - | 1e+1 | At5g43700 | ATAUX2-11 (AUXIN INDUCIBLE 2-11) | O.I. | H.G. | S.X. | |
| 0.30 | 29.8 | 0.99 | ZmAffx.107.1.A1_at | AI665548 | hypothetical protein LOC100275548 | - | 8e-1 | At4g19095 | unknown protein | O.I. | H.G. | S.X. | |
| 0.30 | 29.8 | 0.99 | ZmAffx.898.1.A1_at | AI770889 | - | - | 8e-1 | At3g15280 | unknown protein | O.I. | H.G. | S.X. | |
| 0.30 | 29.8 | 0.99 | Zm.12589.2.S1_at | CK144832 | DNA-directed RNA polymerase II 36 kDa polypeptide A | - | 1e-19 | At2g15430 | NRPB3 | O.I. | H.G. | S.X. | |
| 0.30 | 29.8 | 0.99 | ZmAffx.751.1.A1_at | AI745874 | - | - | 1e+1 | At5g44990 | - | O.I. | H.G. | S.X. | |
| 0.29 | 28.1 | 0.99 | Zm.13403.1.S1_x_at | AF457949.1 | - | - | 2e-2 | At1g67640 | lysine and histidine specific transporter, putative | O.I. | H.G. | S.X. | |
| 0.28 | 28.1 | 0.99 | ZmAffx.717.1.A1_at | AI739812 | - | - | 8e-1 | At3g07565 | DNA binding | O.I. | H.G. | S.X. | |
| 0.28 | 28.1 | 0.99 | Zm.6085.2.A1_a_at | AI759119 | hypothetical protein LOC100280198 | - | 1e+1 | At5g53820 | unknown protein | O.I. | H.G. | S.X. | |
| 0.28 | 28.1 | 0.99 | Zm.10501.1.S1_at | BQ485592 | hypothetical protein LOC100194407 | - | 7e+0 | At5g66005 | Expressed protein | O.I. | H.G. | S.X. | |
| 0.28 | 28.1 | 0.99 | ZmAffx.1092.1.S1_s_at | AW066155 | - | - | 1e-107 | Atcg00490 | - | O.I. | H.G. | S.X. | |
| 0.27 | 24.6 | 0.99 | Zm.6809.2.A1_a_at | AW308676 | hypothetical protein LOC100273388 | - | 5e+0 | At1g62220 | unknown protein | O.I. | H.G. | S.X. | |
| 0.26 | 22.7 | 0.99 | Zm.3173.1.A1_at | CF019257 | pectate lyase 4 | - | 6e-5 | At3g09540 | pectate lyase family protein | O.I. | H.G. | S.X. | |
| 0.25 | 21.3 | 0.99 | ZmAffx.190.1.A1_at | AI881316 | - | - | 5e-2 | At3g56910 | PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) | O.I. | H.G. | S.X. | |
| 0.25 | 21.3 | 0.99 | Zm.9743.1.A1_at | CF627519 | hypothetical protein LOC100274749 | - | 7e+0 | At3g14930 | HEME1 | O.I. | H.G. | S.X. | |
| 0.25 | 21.3 | 0.99 | Zm.2687.1.A1_at | CD441015 | - | - | 3e+0 | At4g02610 | tryptophan synthase, alpha subunit, putative | O.I. | H.G. | S.X. | |
| 0.24 | 19.8 | 0.99 | ZmAffx.758.1.S1_at | AI746000 | - | - | 3e-3 | At4g22260 | IM (IMMUTANS) | O.I. | H.G. | S.X. | |
| 0.24 | 19.8 | 0.99 | Zm.10487.1.S1_at | CF009695 | desiccation-associated protein | - | 1e-1 | At1g12665 | - | O.I. | H.G. | S.X. | |
| 0.24 | 19.8 | 0.99 | Zm.13669.2.A1_at | BM350396 | - | - | 2e-9 | At4g02630 | protein kinase family protein | O.I. | H.G. | S.X. | |
| 0.23 | 18.6 | 0.99 | Zm.3169.5.S1_x_at | AI739763 | minichromosome maintenance protein | - | 1e-1 | At5g44635 | minichromosome maintenance family protein / MCM family protein | O.I. | H.G. | S.X. | |
| 0.23 | 18.6 | 0.99 | Zm.19.1.S1_at | M57249.1 | phospholipid transfer protein homolog1 | - | 5e+0 | At4g32105 | galactosyltransferase | O.I. | H.G. | S.X. | |
| 0.23 | 18.6 | 0.99 | ZmAffx.1142.1.A1_at | AW399873 | - | - | 2e+0 | At5g47550 | cysteine protease inhibitor, putative / cystatin, putative | O.I. | H.G. | S.X. | |
| 0.23 | 18.6 | 0.99 | ZmAffx.406.1.A1_at | AI670258 | - | - | 4e-1 | At2g01505 | CLE16 (CLAVATA3/ESR-RELATED 16) | O.I. | H.G. | S.X. | |
| 0.21 | 15.5 | 0.99 | ZmAffx.973.1.A1_at | AI833889 | - | - | 1e+1 | At5g24318 | catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds | O.I. | H.G. | S.X. | |
| 0.20 | 14.2 | 0.99 | ZmAffx.1040.1.A1_at | AI881777 | - | - | 3e+0 | At1g49590 | formin-binding protein-related | O.I. | H.G. | S.X. | |
| 0.20 | 14.2 | 0.99 | Zm.17818.1.A1_at | CK145213 | - | - | 6e+0 | At5g52470 | FIB1 (FIBRILLARIN 1) | O.I. | H.G. | S.X. | |
| 0.15 | 8.6 | 0.99 | ZmAffx.201.1.S1_at | AI670148 | - | - | 3e+0 | At2g27740 | unknown protein | O.I. | H.G. | S.X. | |
| Std2 GX | %ile | GSM ID | Assay name | GSE ID | Experiment title | Link to GEO |
| 9.9 | 98.3 | GSM320455 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes |  |
| 9.6 | 98.3 | GSM320453 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 9.4 | 98.3 | GSM162267 | Mutant 1 with array type maize from Affymetrix | GSE7030 | Phenotypic and molecular characterisation of a novel Bt2 allele in maize | |
| 7.4 | 97.8 | GSM320454 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 6.6 | 97.6 | GSM162265 | Wild type 1 with array type maize from Affymetrix | GSE7030 | Phenotypic and molecular characterisation of a novel Bt2 allele in maize | |
| 4.9 | 96.7 | GSM162264 | Mutant 2 with array type maize from Affymetrix | GSE7030 | Phenotypic and molecular characterisation of a novel Bt2 allele in maize | |
| 4.0 | 95.8 | GSM320447 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 3.9 | 95.7 | GSM162266 | Wild type 2 with array type maize from Affymetrix | GSE7030 | Phenotypic and molecular characterisation of a novel Bt2 allele in maize | |
| 3.8 | 95.5 | GSM320449 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 2.7 | 93.2 | GSM320451 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
