Co-expression analysis

Gene ID Zm.818.2.A1_at
Gene name Hypothetical protein LOC100216560
Homology with ArabidopsisSimilar to At5g67490: unknown protein (HF=1e+1)
Module size 6 genes
NF 0.64
%ile 85.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6785.80.76Zm.818.2.A1_atCO531833Hypothetical protein LOC100216560-1e+1At5g67490unknown proteinO.I.H.G.S.X.
0.8094.00.75Zm.206.3.S1_x_atY09636.140S ribosomal subunit protein S21-5e-12At3g5389040S ribosomal protein S21 (RPS21B)O.I.H.G.S.X.
0.7188.20.67Zm.910.1.A1_atCK347167--7e-13At2g45640SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18)O.I.H.G.S.X.
0.6179.50.70ZmAffx.1113.1.A1_atAI600810Hypothetical protein LOC100216906-4e+0At4g33550lipid bindingO.I.H.G.S.X.
0.4759.90.75Zm.17634.1.A1_atCK367914--9e-1At4g19270unknown proteinO.I.H.G.S.X.
0.4048.50.72Zm.18273.1.S1_atCO517709--3e+0At5g60490FLA12O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.698.6GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.098.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.298.4GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.598.3GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.798.1GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.598.1GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.897.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.797.9GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.095.8GSM202298B73 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g67490, orthologous to the query gene, Zm.818.2.A1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.3439.8At5g67490836885unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOBPFO.I.H.G.S.X.
0.5368.6At5g62575836378unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.H.G.S.X.
0.4050.8At4g13520826984SMAP1 (SMALL ACIDIC PROTEIN 1)Encodes a small acid protein (SMAP1) that mediates responses Arabidopsis root to the synthetic auxin 2,4-Dichlorophenoxyacetic acid.O.I.H.G.S.X.
0.3846.7At5g07960830690unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.H.G.S.X.
0.3643.6At1g15120838075ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putativeF:ubiquinol-cytochrome-c reductase activity;P:mitochondrial electron transport, ubiquinol to cytochrome c;C:mitochondrion, mitochondrial respiratory chain complex III;MPOFO.I.H.G.S.X.
0.2726.2At5g57815835891cytochrome c oxidase subunit 6b, putativeF:cytochrome-c oxidase activity;P:unknown;C:mitochondrion;MPFOO.I.H.G.S.X.
0.2217.5At4g21105827858cytochrome-c oxidase/ electron carrierF:electron carrier activity, cytochrome-c oxidase activity;P:unknown;C:mitochondrion, plasma membrane;PO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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