Co-expression analysis

Gene ID Zm.8134.1.S1_at
Gene name snRK1-interacting protein 1
Homology with ArabidopsisSimilar to At5g53730: harpin-induced family protein / HIN1 family protein / harpin-responsive family protein (HF=7e+0)
Module size 7 genes
NF 0.41
%ile 47.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5369.10.94Zm.8134.1.S1_atBM073042snRK1-interacting protein 1-7e+0At5g53730harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinO.I.H.G.S.X.
0.7188.20.94Zm.9637.1.A1_atBM334419--4e-1At1g31060unknown proteinO.I.H.G.S.X.
0.5674.40.94Zm.5048.3.S1_x_atAY103537.1hypothetical protein LOC100279926-3e-57At4g24190SHD (SHEPHERD)O.I.H.G.S.X.
0.4352.80.95Zm.803.1.A1_atCF625813hypothetical protein LOC100274731-6e-1At5g25210unknown proteinO.I.H.G.S.X.
0.4048.50.95Zm.3503.1.A1_atBM347620hypothetical protein LOC100217151-2e+0At2g29580zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.4048.50.96Zm.5707.1.S1_atCF631594copper chaperone-3e-2At1g66240ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1)O.I.H.G.S.X.
0.1912.80.94Zm.13752.1.S1_atAY105902.1serine palmitoyltransferase 2-2e-18At5g23670LCB2O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.698.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.198.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.698.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.698.4GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.598.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.198.4GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.698.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.698.3GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.198.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.492.2GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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