CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.8122.1.A1_at

Gene name hypothetical protein LOC100274535
Homology with Arabidopsis Similar to At2g44610: RAB6A (HF=4e-73)

Module size 6 genes

NF 0.32

%ile 31.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 92.1 0.97 Zm.8122.1.A1_at BM736458 hypothetical protein LOC100274535 - 4e-73 At2g44610 RAB6A O.I. H.G. S.X.
0.44 55.7 0.96 Zm.587.1.A1_at AF243043.1 DNA cytosine methyltransferase MET2a - 4e-1 At1g69770 CMT3 (chromomethylase 3) O.I. H.G. S.X.
0.36 41.3 0.97 Zm.18241.1.S1_at AI738184 PP protein - 7e-29 At4g31750 WIN2 (HOPW1-1-INTERACTING 2) O.I. H.G. S.X.
0.23 18.6 0.96 Zm.8119.1.S1_at AY110313.1 - - 8e-5 At1g03650 GCN5-related N-acetyltransferase (GNAT) family protein O.I. H.G. S.X.
0.20 14.2 0.96 Zm.1359.1.S1_at L20139.1 male gametophyte-specific2 - 3e-6 At3g01270 pectate lyase family protein O.I. H.G. S.X.
0.16 9.4 0.97 Zm.3436.1.A1_at AI964659 hypothetical protein LOC100217002 - 1e-20 At3g54190 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.40	48.5	0.93	Zm.3725.1.A1_at	BG550509	hypothetical protein LOC100273697	-	3e-5	At5g58870	ftsh9 (FtsH protease 9)	O.I.	H.G.	S.X.
0.40	48.5	0.94	Zm.3618.2.S1_a_at	CF629424	glutathione synthetase	-	1e-5	At5g27380	GSH2 (GLUTATHIONE SYNTHETASE 2)	O.I.	H.G.	S.X.
0.40	48.5	0.97	Zm.16419.1.S1_at	CF273296	hypothetical protein LOC100276284	-	2e+1	At5g08190	NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12)	O.I.	H.G.	S.X.
0.38	44.2	0.94	Zm.18873.2.A1_at	AI670642	-	-	1e+0	At5g08150	unknown protein	O.I.	H.G.	S.X.
0.36	41.3	0.96	Zm.811.1.A1_at	CA405132	cathepsin B-like cysteine proteinase 3	-	2e-23	At1g02305	cathepsin B-like cysteine protease, putative	O.I.	H.G.	S.X.
0.33	36.0	0.92	Zm.10316.1.S1_at	AB061271.2	NAS2 protein	-	1e+1	At5g04950	NAS1 (NICOTIANAMINE SYNTHASE 1)	O.I.	H.G.	S.X.
0.33	36.0	0.95	ZmAffx.907.1.A1_at	AI770929	-	-	1e+1	At5g37780	CAM1 (CALMODULIN 1)	O.I.	H.G.	S.X.
0.33	36.0	0.95	Zm.3565.1.A1_at	AW042565	-	-	5e-13	At1g54590	splicing factor Prp18 family protein	O.I.	H.G.	S.X.
0.31	31.6	0.96	Zm.5746.1.A1_at	CK986017	-	-	4e-1	At1g62510	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.31	31.6	0.97	Zm.7976.1.S1_at	BM080696	hypothetical protein LOC100217261	-	2e-46	At5g37680	ATARLA1A (ADP-ribosylation factor-like A1A)	O.I.	H.G.	S.X.
0.30	29.8	0.96	ZmAffx.185.1.S1_at	AI668356	-	-	1e+1	At5g58220	TTL (Transthyretin-Like protein)	O.I.	H.G.	S.X.
0.27	24.6	0.94	Zm.13787.1.A1_at	AY105138.1	-	-	2e-3	At3g03490	PEX19-1 (peroxin 19-1)	O.I.	H.G.	S.X.
0.25	21.3	0.93	Zm.871.2.A1_a_at	CF637006	-	-	1e-3	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	O.I.	H.G.	S.X.
0.25	21.3	0.95	Zm.4271.5.S1_at	AI881217	Hypothetical protein LOC100191665	-	2e+1	At3g55470	C2 domain-containing protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.6 98.6 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4 98.4 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8 98.3 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6 98.3 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6 98.3 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6 98.1 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3 98.0 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2 98.0 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9 97.9 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6 97.1 GSM202298 B73 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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