Co-expression analysis

Gene ID	Zm.8122.1.A1_at
Gene name	hypothetical protein LOC100274535
Homology with Arabidopsis	Similar to At2g44610: RAB6A (HF=4e-73)
Module size	6 genes
NF	0.32
%ile	31.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.1	0.97	Zm.8122.1.A1_at	BM736458	hypothetical protein LOC100274535	-	4e-73	At2g44610	RAB6A	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.96	Zm.587.1.A1_at	AF243043.1	DNA cytosine methyltransferase MET2a	-	4e-1	At1g69770	CMT3 (chromomethylase 3)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.97	Zm.18241.1.S1_at	AI738184	PP protein	-	7e-29	At4g31750	WIN2 (HOPW1-1-INTERACTING 2)	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.96	Zm.8119.1.S1_at	AY110313.1	-	-	8e-5	At1g03650	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.96	Zm.1359.1.S1_at	L20139.1	male gametophyte-specific2	-	3e-6	At3g01270	pectate lyase family protein	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.97	Zm.3436.1.A1_at	AI964659	hypothetical protein LOC100217002	-	1e-20	At3g54190	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.6	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

A co-expression module including the grape gene, 1621785_at, orthologous to the query gene, Zm.8122.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	1621785_at	At2g44610	hypothetical protein LOC100242004	-	2e-101	At2g44610	RAB6A	O.I.	H.G.	S.X.	Please select
0.53	75.2	1615717_s_at	At2g44610	hypothetical protein LOC100252829	-	7e-71	At1g04760	ATVAMP726	O.I.	H.G.	S.X.	Please select
0.50	72.7	1608040_at	At2g44610	hypothetical protein LOC100264739	-	1e+0	At2g36026	-	O.I.	H.G.	S.X.	Please select
0.50	72.7	1616979_s_at	At2g44610	hypothetical protein LOC100262599	-	1e-63	At1g75440	UBC16 (ubiquitin-conjugating enzyme 16)	O.I.	H.G.	S.X.	Please select
0.43	61.5	1620975_at	At2g44610	hypothetical protein LOC100258366	-	7e-55	At1g11890	SEC22	O.I.	H.G.	S.X.	Please select
0.16	16.7	1612977_at	At2g44610	hypothetical protein LOC100266745	-	5e-53	At3g60250	CKB3	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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