| Gene ID | Zm.8122.1.A1_at |
| Gene name | hypothetical protein LOC100274535 |
| Homology with Arabidopsis | Similar to At2g44610: RAB6A (HF=4e-73) |
| Module size | 6 genes |
| NF | 0.32 |
| %ile | 31.4 |
| VF | %ile | CC | Gene ID | Repr. ID | Gene name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.77 | 92.1 | 0.97 | Zm.8122.1.A1_at | BM736458 | hypothetical protein LOC100274535 | - | 4e-73 | At2g44610 | RAB6A | O.I. | H.G. | S.X. | |
| 0.44 | 55.7 | 0.96 | Zm.587.1.A1_at | AF243043.1 | DNA cytosine methyltransferase MET2a | - | 4e-1 | At1g69770 | CMT3 (chromomethylase 3) | O.I. | H.G. | S.X. | |
| 0.36 | 41.3 | 0.97 | Zm.18241.1.S1_at | AI738184 | PP protein | - | 7e-29 | At4g31750 | WIN2 (HOPW1-1-INTERACTING 2) | O.I. | H.G. | S.X. | |
| 0.23 | 18.6 | 0.96 | Zm.8119.1.S1_at | AY110313.1 | - | - | 8e-5 | At1g03650 | GCN5-related N-acetyltransferase (GNAT) family protein | O.I. | H.G. | S.X. | |
| 0.20 | 14.2 | 0.96 | Zm.1359.1.S1_at | L20139.1 | male gametophyte-specific2 | - | 3e-6 | At3g01270 | pectate lyase family protein | O.I. | H.G. | S.X. | |
| 0.16 | 9.4 | 0.97 | Zm.3436.1.A1_at | AI964659 | hypothetical protein LOC100217002 | - | 1e-20 | At3g54190 | - | O.I. | H.G. | S.X. |
| Std2 GX | %ile | GSM ID | Assay name | GSE ID | Experiment title | Link to GEO |
|---|---|---|---|---|---|---|
| 11.6 | 98.6 | GSM320447 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 10.4 | 98.4 | GSM320449 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 9.8 | 98.3 | GSM320455 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 9.6 | 98.3 | GSM320453 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 9.6 | 98.3 | GSM320448 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 8.6 | 98.1 | GSM320452 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 8.3 | 98.0 | GSM320451 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 8.2 | 98.0 | GSM320454 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 7.9 | 97.9 | GSM320450 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 5.6 | 97.1 | GSM202298 | B73 immature ear tissue, biological replicate 2 | GSE8176 | Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data | |
| VF | %ile | Gene ID | Repr. ID | Gene Name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.46 | 60.9 | Os07g0496000 | At2g44610 | - | Nt-rab6 protein | 9e-68 | At2g44610 | RAB6A | O.I. | H.G. | S.X. | |
| 0.73 | 91.1 | Os03g0355600 | At2g44610 | - | Adapter-related protein complex 1 beta 1 subunit(Beta-adaptin 1) (Adaptor protein complex AP-1 beta-1subunit) (Golgi adaptor HA1/AP1 adaptin beta subunit)(Clathrin assembly protein complex 1 beta large chain).Splice isoform B | 0 | At4g23460 | beta-adaptin, putative | O.I. | H.G. | S.X. | |
| 0.67 | 87.2 | Os05g0461300 | At2g44610 | - | Ras-related protein Rab-8A (Oncogene c-mel) | 4e-48 | At3g53610 | ATRAB8 | O.I. | H.G. | S.X. | |
| 0.63 | 82.7 | Os03g0112400 | At2g44610 | - | AP2 adaptor, appendage domain containing protein | 5e-2 | At5g22770 | alpha-ADR (alpha-adaptin) | O.I. | H.G. | S.X. | |
| 0.61 | 81.2 | Os05g0556100 | At2g44610 | - | SDL5A | 1e-43 | At3g61760 | ADL1B (ARABIDOPSIS DYNAMIN-LIKE 1B) | O.I. | H.G. | S.X. | |
| 0.60 | 79.7 | Os02g0537900 | At2g44610 | - | Vacuolar-type H+-translocating inorganicpyrophosphatase (EC 3.6.1.1) | 5e-87 | At1g16780 | vacuolar-type H+-translocating inorganic pyrophosphatase, putative | O.I. | H.G. | S.X. | |
| 0.53 | 71.3 | Os03g0227000 | At2g44610 | - | Coatomer gamma subunit (Gamma-coat protein)(Gamma-COP) | 1e-25 | At4g34450 | coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative | O.I. | H.G. | S.X. | |
| 0.47 | 62.3 | Os02g0297600 | At2g44610 | - | Protein of unknown function DUF707 family protein | 8e-20 | At1g67850 | unknown protein | O.I. | H.G. | S.X. | |
| 0.47 | 62.3 | Os07g0657200 | At2g44610 | - | WD40-like domain containing protein | 3e-8 | At3g63460 | WD-40 repeat family protein | O.I. | H.G. | S.X. | |
| 0.44 | 58.1 | Os03g0804300 | At2g44610 | - | Huntingtin-interacting protein 14 | 6e-14 | At3g60800 | zinc finger (DHHC type) family protein | O.I. | H.G. | S.X. |
| Arabidopsis_thaliana |
| Glycine_max |
| Hordeum_vulgare |
| Populus_trichocarpa |
| Triticum_aestivum |
| Vitis_vinifera |
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