Co-expression analysis

Gene ID Zm.8122.1.A1_at
Gene name hypothetical protein LOC100274535
Homology with ArabidopsisSimilar to At2g44610: RAB6A (HF=4e-73)
Module size 6 genes
NF 0.32
%ile 31.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7792.10.97Zm.8122.1.A1_atBM736458hypothetical protein LOC100274535-4e-73At2g44610RAB6AO.I.H.G.S.X.
0.4455.70.96Zm.587.1.A1_atAF243043.1DNA cytosine methyltransferase MET2a-4e-1At1g69770CMT3 (chromomethylase 3)O.I.H.G.S.X.
0.3641.30.97Zm.18241.1.S1_atAI738184PP protein-7e-29At4g31750WIN2 (HOPW1-1-INTERACTING 2)O.I.H.G.S.X.
0.2318.60.96Zm.8119.1.S1_atAY110313.1--8e-5At1g03650GCN5-related N-acetyltransferase (GNAT) family proteinO.I.H.G.S.X.
0.2014.20.96Zm.1359.1.S1_atL20139.1male gametophyte-specific2-3e-6At3g01270pectate lyase family proteinO.I.H.G.S.X.
0.169.40.97Zm.3436.1.A1_atAI964659hypothetical protein LOC100217002-1e-20At3g54190-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.698.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.498.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.898.3GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.698.3GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.698.3GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.298.0GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.997.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.697.1GSM202298B73 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig7349_at, orthologous to the query gene, Zm.8122.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6885.1Contig7349_atAt2g44610--1e-66At2g44610RAB6AO.I.H.G.S.X.
0.6077.3Contig2940_s_atAt2g44610--5e-6At2g47380cytochrome c oxidase subunit Vc family protein / COX5C family proteinO.I.H.G.S.X.
0.5674.3Contig665_s_atAt2g44610--2e-20At1g07820histone H4O.I.H.G.S.X.
0.5167.5Contig344_atAt2g44610--5e-1At1g71520AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.4762.2Contig13733_atAt2g44610--2e-3At5g35580ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseO.I.H.G.S.X.
0.4458.9Contig4893_atAt2g44610--2e-25At3g02780IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2)O.I.H.G.S.X.
0.4458.9Contig24576_atAt2g44610--1e+0At5g28295unknown proteinO.I.H.G.S.X.
0.4356.4Contig6283_atAt2g44610--1e-1At3g60410unknown proteinO.I.H.G.S.X.
0.4356.4Contig2828_atAt2g44610--2e-50At5g63400ADK1 (ADENYLATE KINASE 1)O.I.H.G.S.X.
0.4255.2Contig15424_atAt2g44610--2e+1At1g03950VPS2.3 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2.3)O.I.H.G.S.X.
0.3849.5HVSMEm0005B11r2_x_atAt2g44610--4e+0At2g36020HVA22J (HVA22-LIKE PROTEIN J)O.I.H.G.S.X.
0.3545.1Contig17229_atAt2g44610--1e+1At2g28570unknown proteinO.I.H.G.S.X.
0.3342.6Contig3420_atAt2g44610--5e-66At5g67380CKA1 (CASEIN KINASE ALPHA 1)O.I.H.G.S.X.
0.3240.3Contig19935_atAt2g44610--2e-6At3g58000VQ motif-containing proteinO.I.H.G.S.X.
0.3138.6Contig8718_atAt2g44610--7e+0Atmg00150-O.I.H.G.S.X.
0.2732.1Contig6631_atAt2g44610--5e-1At1g72960root hair defective 3 GTP-binding (RHD3) family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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