CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.8122.1.A1_at

Gene name hypothetical protein LOC100274535
Homology with Arabidopsis Similar to At2g44610: RAB6A (HF=4e-73)

Module size 6 genes

NF 0.32

%ile 31.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 92.1 0.97 Zm.8122.1.A1_at BM736458 hypothetical protein LOC100274535 - 4e-73 At2g44610 RAB6A O.I. H.G. S.X.
0.44 55.7 0.96 Zm.587.1.A1_at AF243043.1 DNA cytosine methyltransferase MET2a - 4e-1 At1g69770 CMT3 (chromomethylase 3) O.I. H.G. S.X.
0.36 41.3 0.97 Zm.18241.1.S1_at AI738184 PP protein - 7e-29 At4g31750 WIN2 (HOPW1-1-INTERACTING 2) O.I. H.G. S.X.
0.23 18.6 0.96 Zm.8119.1.S1_at AY110313.1 - - 8e-5 At1g03650 GCN5-related N-acetyltransferase (GNAT) family protein O.I. H.G. S.X.
0.20 14.2 0.96 Zm.1359.1.S1_at L20139.1 male gametophyte-specific2 - 3e-6 At3g01270 pectate lyase family protein O.I. H.G. S.X.
0.16 9.4 0.97 Zm.3436.1.A1_at AI964659 hypothetical protein LOC100217002 - 1e-20 At3g54190 - O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.6 98.6 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4 98.4 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8 98.3 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6 98.3 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6 98.3 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6 98.1 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3 98.0 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2 98.0 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9 97.9 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6 97.1 GSM202298 B73 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g44610, orthologous to the query gene, Zm.8122.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.40 50.8 At2g44610 819069 RAB6A Encodes a GTP-binding protein with similarity to yeast YPT6 . RAB6 can complement the yeast YTP mutant. O.I. H.G. S.X.
0.67 81.6 At2g20760 816605 protein binding / structural molecule F:protein binding, structural molecule activity;P:intracellular protein transport, vesicle-mediated transport;C:plasma membrane;MBOPF O.I. H.G. S.X.
0.57 73.8 At4g34960 829648 peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative F:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:Golgi apparatus;BOMFPAV O.I. H.G. S.X.
0.40 50.8 At2g20420 816561 succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putative F:succinate-CoA ligase (GDP-forming) activity, ATP binding;P:response to cadmium ion, metabolic process;C:mitochondrion;OBMFAP O.I. H.G. S.X.
0.40 50.8 At2g45060 819113 - F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMBFO O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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