Co-expression analysis

Gene ID	Zm.8105.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g37640: ACA2 (CALCIUM ATPASE 2) (HF=1e-3)
Module size	6 genes
NF	0.38
%ile	41.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.95	Zm.8105.1.A1_at	BM379418	-	-	1e-3	At4g37640	ACA2 (CALCIUM ATPASE 2)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.95	Zm.8106.1.S1_at	BM079856	hypothetical protein LOC100191603	-	5e-6	At2g43020	ATPAO2 (Polyamine oxidase 2)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.95	Zm.8102.1.A1_at	CF005906	IDP608 protein /// transmembrane BAX inhibitor motif-containing protein 4 /// transmembrane BAX inhibitor motif-containing protein 4	-	4e-2	At3g63310	glutamate binding	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.95	Zm.18873.2.A1_at	AI670642	-	-	1e+0	At5g08150	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.95	Zm.4590.1.S1_a_at	CD446584	Alpha-tubulin #3	-	4e-179	At1g50010	TUA2	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.95	Zm.587.1.A1_at	AF243043.1	DNA cytosine methyltransferase MET2a	-	4e-1	At1g69770	CMT3 (chromomethylase 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	96.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM206330	Lower pulvinus 2 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.4	94.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2	94.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM206309	Lower pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.8	93.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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