Co-expression analysis

Gene ID Zm.8094.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g50720: protein kinase, putative (HF=2e+0)
Module size 6 genes
NF 0.04
%ile 2.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7792.10.92Zm.8094.1.A1_atBM266491--2e+0At3g50720protein kinase, putativeO.I.H.G.S.X.
0.1912.80.92Zm.1821.1.A1_atBG840732--9e-1At5g28490LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1)O.I.H.G.S.X.
0.158.60.93Zm.4097.1.A1_atBG266571hypothetical protein LOC100280288-3e+0At5g48890transcription factorO.I.H.G.S.X.
0.125.90.93Zm.19297.1.A1_atCO524882hypothetical protein LOC100193577-2e-2At3g49800BSD domain-containing proteinO.I.H.G.S.X.
0.020.70.91Zm.2157.5.A1_x_atCK348105ribosomal protein S11-2e-35At5g23740RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA)O.I.H.G.S.X.
0.010.30.92Zm.19001.1.A1_atAY108422.1--3e-6At3g01540DRH1 (DEAD BOX RNA HELICASE 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.098.9GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.098.9GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.698.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.098.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.998.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.798.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.498.1GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.098.0GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.494.9GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1620756_at, orthologous to the query gene, Zm.8094.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5980.61620756_atAt3g50720similar to ATNMNAT (A. THALIANA NICOTINATE/NICOTINAMIDE MONONUCLEOTIDE ADENYLTRANSFERASE); nicotinamide-nucleotide adenylyltransferase/ nicotinate-nucleotide adenylyltransferase-3e-21At5g55810AtNMNAT (A. thaliana nicotinate/nicotinamide mononucleotide adenyltransferase)O.I.H.G.S.X.
0.3650.71615221_atAt3g50720--1e-7At1g17580MYA1 (MYOSIN 1)O.I.H.G.S.X.
0.2937.71616451_atAt3g50720hypothetical protein LOC100259495-5e-38At4g33250EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K)O.I.H.G.S.X.
0.2530.51616334_a_atAt3g50720--0At4g05320UBQ10 (POLYUBIQUITIN 10)O.I.H.G.S.X.
0.2327.51613075_atAt3g50720hypothetical protein LOC100248675-4e-20At3g05060SAR DNA-binding protein, putativeO.I.H.G.S.X.
0.2225.61612917_atAt3g50720hypothetical protein LOC100261248-4e-17At5g25757unknown proteinO.I.H.G.S.X.
0.1515.61613065_atAt3g50720similar to Os02g0125100-3e-48At4g13430IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum



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