Co-expression analysis

Gene ID	Zm.8094.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g50720: protein kinase, putative (HF=2e+0)
Module size	6 genes
NF	0.04
%ile	2.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.1	0.92	Zm.8094.1.A1_at	BM266491	-	-	2e+0	At3g50720	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.92	Zm.1821.1.A1_at	BG840732	-	-	9e-1	At5g28490	LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1)	O.I.	H.G.	S.X.	Please select
0.15	8.6	0.93	Zm.4097.1.A1_at	BG266571	hypothetical protein LOC100280288	-	3e+0	At5g48890	transcription factor	O.I.	H.G.	S.X.	Please select
0.12	5.9	0.93	Zm.19297.1.A1_at	CO524882	hypothetical protein LOC100193577	-	2e-2	At3g49800	BSD domain-containing protein	O.I.	H.G.	S.X.	Please select
0.02	0.7	0.91	Zm.2157.5.A1_x_at	CK348105	ribosomal protein S11	-	2e-35	At5g23740	RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA)	O.I.	H.G.	S.X.	Please select
0.01	0.3	0.92	Zm.19001.1.A1_at	AY108422.1	-	-	3e-6	At3g01540	DRH1 (DEAD BOX RNA HELICASE 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.0	98.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.0	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1620756_at, orthologous to the query gene, Zm.8094.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	80.6	1620756_at	At3g50720	similar to ATNMNAT (A. THALIANA NICOTINATE/NICOTINAMIDE MONONUCLEOTIDE ADENYLTRANSFERASE); nicotinamide-nucleotide adenylyltransferase/ nicotinate-nucleotide adenylyltransferase	-	3e-21	At5g55810	AtNMNAT (A. thaliana nicotinate/nicotinamide mononucleotide adenyltransferase)	O.I.	H.G.	S.X.	Please select
0.36	50.7	1615221_at	At3g50720	-	-	1e-7	At1g17580	MYA1 (MYOSIN 1)	O.I.	H.G.	S.X.	Please select
0.29	37.7	1616451_at	At3g50720	hypothetical protein LOC100259495	-	5e-38	At4g33250	EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K)	O.I.	H.G.	S.X.	Please select
0.25	30.5	1616334_a_at	At3g50720	-	-	0	At4g05320	UBQ10 (POLYUBIQUITIN 10)	O.I.	H.G.	S.X.	Please select
0.23	27.5	1613075_at	At3g50720	hypothetical protein LOC100248675	-	4e-20	At3g05060	SAR DNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.22	25.6	1612917_at	At3g50720	hypothetical protein LOC100261248	-	4e-17	At5g25757	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	1613065_at	At3g50720	similar to Os02g0125100	-	3e-48	At4g13430	IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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