Co-expression analysis

Gene ID	Zm.8072.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g52390: tatD-related deoxyribonuclease family protein (HF=6e+0)
Module size	7 genes
NF	0.39
%ile	43.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	55.7	0.97	Zm.8072.1.A1_at	BM072831	-	-	6e+0	At3g52390	tatD-related deoxyribonuclease family protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.98	Zm.16462.1.A1_at	AY347711.1	Xaa-His dipeptidase; X-His dipeptidase; beta-alanyl-histidine dipeptidase	-	7e+0	At5g57685	AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	Zm.8514.1.S1_at	AY104758.1	-	-	5e+0	At5g35525	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.250.1.S1_at	CF007330	basal layer antifungal protein2 /// hypothetical protein LOC100193396 /// hypothetical protein LOC100279097	-	5e+0	At3g06000	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.98	Zm.7017.1.A1_at	BM072990	hypothetical protein LOC100272933	-	2e+0	At1g31760	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.98	Zm.6103.3.S1_at	AI668289	-	-	8e-1	At1g21010	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	8.6	0.98	Zm.7117.2.A1_at	CF627265	hypothetical protein LOC100273279	-	3e+0	At5g40155	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
26.8	99.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.1	99.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.0	99.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.7	99.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.4	99.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.3	98.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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