Co-expression analysis

Gene ID Zm.8024.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g49430: SRp34a (Ser/Arg-rich protein 34a) (HF=4e-1)
Module size 6 genes
NF 0.08
%ile 4.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4048.50.95Zm.8024.1.A1_atBM072669--4e-1At3g49430SRp34a (Ser/Arg-rich protein 34a)O.I.H.G.S.X.
0.115.30.95Zm.1831.1.S1_atBG840713--1e-1At4g21760BGLU47 (Beta-glucosidase 47)O.I.H.G.S.X.
0.115.30.95Zm.12459.1.A1_atBE186592--9e-6At3g44600CYP71 (CYCLOPHILIN71)O.I.H.G.S.X.
0.094.00.95Zm.13317.1.S1_atCA827898hypothetical protein LOC100277679-2e-1At3g55790unknown proteinO.I.H.G.S.X.
0.051.90.95Zm.859.1.A1_atCF060267hypothetical protein LOC100191283-8e-1At4g28420aminotransferase, putativeO.I.H.G.S.X.
0.051.90.95Zm.5229.1.A1_atCO519750ATP-dependent transporter ycf16-4e-24At3g10670ATNAP7O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5065.70.91Zm.16271.2.A1_atAY110109.1Hypothetical protein LOC100193158-2e-28At5g60860AtRABA1f (Arabidopsis Rab GTPase homolog A1f)O.I.H.G.S.X.
0.4658.40.94Zm.1954.1.A1_atAY104136.1--1e+0At5g18748unknown proteinO.I.H.G.S.X.
0.4455.70.96Zm.10405.1.S1_atAY108533.1PHD finger protein-1e-7At3g42790AL3 (ALFIN-LIKE 3)O.I.H.G.S.X.
0.4048.50.97Zm.15306.1.A1_atCK369690phytol kinase-9e+0Atmg00160-O.I.H.G.S.X.
0.3641.30.93Zm.12572.1.S1_atBM379732hypothetical protein LOC100272267-2e-1At1g71080unknown proteinO.I.H.G.S.X.
0.3336.00.95Zm.16040.1.S1_atCF009930--1e+1At3g20870metal transporter family proteinO.I.H.G.S.X.
0.3131.60.92Zm.9808.1.A1_atCF628817hypothetical protein LOC100194097-7e+0At4g20990ACA4 (ALPHA CARBONIC ANHYDRASE 4)O.I.H.G.S.X.
0.2928.10.93Zm.11990.1.A1_atBM382449--8e+0At5g23830MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinO.I.H.G.S.X.
0.2928.10.93Zm.9307.1.A1_atAY105170.1stromal cell-derived factor 2-6e-1At3g42310unknown proteinO.I.H.G.S.X.
0.2928.10.94Zm.17882.1.S1_atAW090884--4e+0At5g55856-O.I.H.G.S.X.
0.2724.60.93Zm.6054.2.A1_atAY104332.1--4e-2At1g09550pectinacetylesterase, putativeO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.998.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.998.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.598.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.097.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.097.7GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.297.4GSM162266Wild type 2 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO
5.897.2GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.497.0GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.096.7GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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