Co-expression analysis

Gene ID	Zm.8024.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g49430: SRp34a (Ser/Arg-rich protein 34a) (HF=4e-1)
Module size	6 genes
NF	0.08
%ile	4.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.40	48.5	0.95	Zm.8024.1.A1_at	BM072669	-	-	4e-1	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	O.I.	H.G.	S.X.	Please select
0.11	5.3	0.95	Zm.1831.1.S1_at	BG840713	-	-	1e-1	At4g21760	BGLU47 (Beta-glucosidase 47)	O.I.	H.G.	S.X.	Please select
0.11	5.3	0.95	Zm.12459.1.A1_at	BE186592	-	-	9e-6	At3g44600	CYP71 (CYCLOPHILIN71)	O.I.	H.G.	S.X.	Please select
0.09	4.0	0.95	Zm.13317.1.S1_at	CA827898	hypothetical protein LOC100277679	-	2e-1	At3g55790	unknown protein	O.I.	H.G.	S.X.	Please select
0.05	1.9	0.95	Zm.859.1.A1_at	CF060267	hypothetical protein LOC100191283	-	8e-1	At4g28420	aminotransferase, putative	O.I.	H.G.	S.X.	Please select
0.05	1.9	0.95	Zm.5229.1.A1_at	CO519750	ATP-dependent transporter ycf16	-	4e-24	At3g10670	ATNAP7	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.9	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
5.8	97.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the barley gene, HVSMEf0005F10r2_at, orthologous to the query gene, Zm.8024.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.7	HVSMEf0005F10r2_at	At3g49430	-	-	1e+1	Atcg01310	-	O.I.	H.G.	S.X.	Please select
0.78	91.2	Contig6082_at	At3g49430	-	-	2e+0	At3g52760	integral membrane Yip1 family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig12375_at	At3g49430	-	-	1e-4	At3g28940	avirulence-responsive protein, putative / avirulence induced gene (AIG) protein, putative	O.I.	H.G.	S.X.	Please select
0.57	74.9	Contig21045_at	At3g49430	-	-	4e+0	At5g51130	methyltransferase	O.I.	H.G.	S.X.	Please select
0.53	69.7	Contig3024_at	At3g49430	-	-	3e+0	At3g13310	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig8695_at	At3g49430	-	-	3e+0	At3g28140	calmodulin-binding protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	Contig9509_at	At3g49430	-	-	7e-1	At3g23980	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig10037_at	At3g49430	-	-	9e-1	At5g23760	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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