CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.8024.1.A1_at

Gene name
Homology with Arabidopsis Similar to At3g49430: SRp34a (Ser/Arg-rich protein 34a) (HF=4e-1)

Module size 6 genes

NF 0.08

%ile 4.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.40 48.5 0.95 Zm.8024.1.A1_at BM072669 - - 4e-1 At3g49430 SRp34a (Ser/Arg-rich protein 34a) O.I. H.G. S.X.
0.11 5.3 0.95 Zm.1831.1.S1_at BG840713 - - 1e-1 At4g21760 BGLU47 (Beta-glucosidase 47) O.I. H.G. S.X.
0.11 5.3 0.95 Zm.12459.1.A1_at BE186592 - - 9e-6 At3g44600 CYP71 (CYCLOPHILIN71) O.I. H.G. S.X.
0.09 4.0 0.95 Zm.13317.1.S1_at CA827898 hypothetical protein LOC100277679 - 2e-1 At3g55790 unknown protein O.I. H.G. S.X.
0.05 1.9 0.95 Zm.859.1.A1_at CF060267 hypothetical protein LOC100191283 - 8e-1 At4g28420 aminotransferase, putative O.I. H.G. S.X.
0.05 1.9 0.95 Zm.5229.1.A1_at CO519750 ATP-dependent transporter ycf16 - 4e-24 At3g10670 ATNAP7 O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.9 98.5 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9 98.3 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0 98.2 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5 98.1 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0 97.7 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0 97.7 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2 97.4 GSM162266 Wild type 2 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
5.8 97.2 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4 97.0 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0 96.7 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g49430, orthologous to the query gene, Zm.8024.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.42 53.9 At3g49430 824105 SRp34a (Ser/Arg-rich protein 34a) F:RNA binding, nucleotide binding, nucleic acid binding;P:RNA splicing;C:nucleolus;MOPFBVA O.I. H.G. S.X.
0.50 65.3 At2g24590 816995 splicing factor, putative F:zinc ion binding, nucleotide binding, nucleic acid binding;P:RNA splicing;C:nucleolus;MPFOBVA O.I. H.G. S.X.
0.35 41.6 At2g40290 818621 eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative F:RNA binding, translation initiation factor activity;P:translation;C:nucleus;BOMAFPV O.I. H.G. S.X.
0.25 22.6 At1g79650 844304 RAD23 putative DNA repair protein RAD23 O.I. H.G. S.X.
0.22 17.5 At3g56150 824781 EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) member of eIF3c - eukaryotic initiation factor 3c O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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