Co-expression analysis

Gene ID Zm.8024.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g49430: SRp34a (Ser/Arg-rich protein 34a) (HF=4e-1)
Module size 6 genes
NF 0.08
%ile 4.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4048.50.95Zm.8024.1.A1_atBM072669--4e-1At3g49430SRp34a (Ser/Arg-rich protein 34a)O.I.H.G.S.X.
0.115.30.95Zm.1831.1.S1_atBG840713--1e-1At4g21760BGLU47 (Beta-glucosidase 47)O.I.H.G.S.X.
0.115.30.95Zm.12459.1.A1_atBE186592--9e-6At3g44600CYP71 (CYCLOPHILIN71)O.I.H.G.S.X.
0.094.00.95Zm.13317.1.S1_atCA827898hypothetical protein LOC100277679-2e-1At3g55790unknown proteinO.I.H.G.S.X.
0.051.90.95Zm.859.1.A1_atCF060267hypothetical protein LOC100191283-8e-1At4g28420aminotransferase, putativeO.I.H.G.S.X.
0.051.90.95Zm.5229.1.A1_atCO519750ATP-dependent transporter ycf16-4e-24At3g10670ATNAP7O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.998.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.998.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.598.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.097.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.097.7GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.297.4GSM162266Wild type 2 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO
5.897.2GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.497.0GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.096.7GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g49430, orthologous to the query gene, Zm.8024.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.4253.9At3g49430824105SRp34a (Ser/Arg-rich protein 34a)F:RNA binding, nucleotide binding, nucleic acid binding;P:RNA splicing;C:nucleolus;MOPFBVAO.I.H.G.S.X.
0.5065.3At2g24590816995splicing factor, putativeF:zinc ion binding, nucleotide binding, nucleic acid binding;P:RNA splicing;C:nucleolus;MPFOBVAO.I.H.G.S.X.
0.3541.6At2g40290818621eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putativeF:RNA binding, translation initiation factor activity;P:translation;C:nucleus;BOMAFPVO.I.H.G.S.X.
0.2522.6At1g79650844304RAD23putative DNA repair protein RAD23O.I.H.G.S.X.
0.2217.5At3g56150824781EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C)member of eIF3c - eukaryotic initiation factor 3cO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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