Co-expression analysis

Gene ID	Zm.7964.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g48375: TGG3 (THIOGLUCOSIDE GLUCOSIDASE 3) (HF=5e-1)
Module size	8 genes
NF	0.49
%ile	61.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	65.7	0.97	Zm.7964.1.A1_at	AY106297.1	-	-	5e-1	At5g48375	TGG3 (THIOGLUCOSIDE GLUCOSIDASE 3)	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.97	Zm.9852.1.A1_at	BM381073	syntaxin 121	-	5e-3	At5g63740	zinc finger protein-related	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.98	Zm.9888.2.A1_a_at	BM334632	-	-	5e+0	At4g16510	YbaK/prolyl-tRNA synthetase-related	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.4775.1.A1_at	CK826898	-	-	1e-1	At2g36695	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.6423.2.A1_at	AI691968	hypothetical protein LOC100273356	-	1e+0	At3g23180	-	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.97	ZmAffx.957.1.S1_at	AI833524	-	-	3e+0	At2g40995	-	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.19335.1.A1_at	CO521700	hypothetical protein LOC100279445	-	6e-4	At3g22440	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.97	Zm.4883.1.A1_at	AY107709.1	Hypothetical protein LOC100216906	-	2e-5	At1g07530	SCL14 (SCARECROW-LIKE 14)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
19.0	99.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.9	99.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.7	99.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.2	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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