Co-expression analysis

Gene ID Zm.7963.1.A1_at
Gene name cation transport protein chaC
Homology with ArabidopsisSimilar to At1g72080: unknown protein (HF=1e-1)
Module size 19 genes
NF 0.43
%ile 50.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6682.30.96Zm.7963.1.A1_atCK348034cation transport protein chaC-1e-1At1g72080unknown proteinO.I.H.G.S.X.
0.6986.50.97Zm.19304.1.A1_atCO525321hypothetical protein LOC100192965-3e-1At1g55230unknown proteinO.I.H.G.S.X.
0.6077.80.97Zm.2147.1.A1_a_atBM380613glycine-rich cell wall structural protein-4e-1At4g01995unknown proteinO.I.H.G.S.X.
0.5674.40.98Zm.11547.1.S1_atCA827895hypothetical protein LOC100276375-1e+1At5g4152040S ribosomal protein S10 (RPS10B)O.I.H.G.S.X.
0.5166.40.96Zm.13193.1.A1_atCD991429--4e-6At4g14990unknown proteinO.I.H.G.S.X.
0.4961.90.97Zm.3385.1.A1_atAW066673C2H2 zinc finger protein-7e-1At4g18930cyclic phosphodiesteraseO.I.H.G.S.X.
0.4861.30.97Zm.12930.1.S1_atCA403471hypothetical protein LOC100191377-3e-3At4g31790diphthine synthase, putative (DPH5)O.I.H.G.S.X.
0.4556.40.97Zm.11238.1.A1_atBM340814--5e-3At5g39100GLP6 (GERMIN-LIKE PROTEIN 6)O.I.H.G.S.X.
0.4251.30.97Zm.9267.1.A1_atBM267708hypothetical protein AY107012 /// UPF0497 membrane protein 7-2e+0At2g36210auxin-responsive family proteinO.I.H.G.S.X.
0.4048.50.97Zm.17516.1.S1_atCF623514hypothetical protein LOC100216611-3e-12At5g63650SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)O.I.H.G.S.X.
0.4048.50.98Zm.18278.1.S1_atCK371368--1e-26At3g52200LTA3O.I.H.G.S.X.
0.3945.60.97Zm.12842.1.A1_atCA401932hydroxyacid oxidase 1-1e-2At3g14415(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeO.I.H.G.S.X.
0.3844.20.97Zm.6228.1.A1_atAI739920--1e+0At1g64370unknown proteinO.I.H.G.S.X.
0.3538.90.98Zm.17724.1.S1_a_atCF623515hypothetical protein LOC100278419-1e+0At3g56240CCH (COPPER CHAPERONE)O.I.H.G.S.X.
0.3538.90.97Zm.4812.1.A1_atBG873771--6e+0At5g26220ChaC-like family proteinO.I.H.G.S.X.
0.3336.00.97Zm.14622.2.S1_atCO534180ubiquinone biosynthesis methyltransferase COQ5-1e-5At5g57300UbiE/COQ5 methyltransferase family proteinO.I.H.G.S.X.
0.3233.40.98Zm.14411.1.A1_a_atAI491646membrane steroid-binding protein 1-7e-16At3g48890ATMP2O.I.H.G.S.X.
0.2928.10.97ZmAffx.1160.1.A1_atAW438281--1e+1At1g24060unknown proteinO.I.H.G.S.X.
0.2216.90.97Zm.10393.1.S1_atAI676981--2e+0At5g11425unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.897.2GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.697.1GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.196.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.095.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.995.7GSM253270ZM_4.5d_Mock_3inf_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
3.494.9GSM253269ZM_4.5d_Mock_3inf_IIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
3.394.7GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.394.7GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.394.7GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.394.7GSM320445protocol: mRNA - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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