Co-expression analysis

Gene ID	Zm.7949.1.A1_at
Gene name	hypothetical protein LOC100192737
Homology with Arabidopsis	Similar to At2g28480: RNA binding (HF=2e+0)
Module size	6 genes
NF	0.28
%ile	24.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	79.5	0.94	Zm.7949.1.A1_at	BQ538368	hypothetical protein LOC100192737	-	2e+0	At2g28480	RNA binding	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.94	Zm.2814.1.A1_at	CB833930	zinc finger C-x8-C-x5-C-x3-H type family protein	-	3e+0	At5g08100	L-asparaginase / L-asparagine amidohydrolase	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.95	Zm.15106.1.A1_at	AI065782	-	-	7e-1	At2g29360	tropinone reductase, putative / tropine dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.94	Zm.9889.1.S1_at	CF006010	hypothetical protein LOC100272580	-	4e-1	At1g21065	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.94	Zm.3630.2.S1_at	CO531431	36.4 kDa proline-rich protein	-	3e+1	At5g24770	VSP2 (VEGETATIVE STORAGE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.12	5.9	0.94	Zm.11379.1.A1_at	CB351163	-	-	5e+0	At2g29995	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.4	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM206307	Lower pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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