Co-expression analysis

Gene ID Zm.7941.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g50040: unknown protein (HF=1e+0)
Module size 6 genes
NF 0.66
%ile 87.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6179.50.98Zm.7941.1.A1_atBM080529--1e+0At3g50040unknown proteinO.I.H.G.S.X.
0.8094.00.98Zm.18369.1.S1_atBQ618986hypothetical protein LOC100193825 /// PCO071075 protein-9e-1At3g53000AtPP2-A15 (Phloem protein 2-A15)O.I.H.G.S.X.
0.6785.80.98Zm.15705.1.A1_atCD440189--1e-4At4g38270GAUT3 (Galacturonosyltransferase 3)O.I.H.G.S.X.
0.6179.50.98Zm.13581.1.A1_atBM379129--2e-4At5g65460kinesin motor protein-relatedO.I.H.G.S.X.
0.5065.70.98Zm.218.1.A1_a_atAB016802.1ABA stimulation MAP kinase-6e-42At2g43790ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)O.I.H.G.S.X.
0.4455.70.98Zm.7620.1.A1_atCF629426hypothetical protein LOC100279978-2e-3At2g24010scpl23 (serine carboxypeptidase-like 23)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6077.80.96Zm.12650.1.A1_atCF648239hypothetical protein LOC100274729-2e-4At2g22430ATHB6O.I.H.G.S.X.
0.5369.10.96Zm.14190.1.S1_atAF435816.1thioredoxin h-like protein-2e+0At4g25030unknown proteinO.I.H.G.S.X.
0.5065.70.97Zm.5501.1.A1_atBM337994hypothetical protein LOC100194266-4e-2At1g55320AAE18 (ACYL-ACTIVATING ENZYME 18)O.I.H.G.S.X.
0.4658.40.98Zm.5995.2.S1_a_atAI666102--2e+0At4g14385-O.I.H.G.S.X.
0.4455.70.96Zm.7960.1.A1_atCF637637transparent testa 12 protein-5e-1At4g21910MATE efflux family proteinO.I.H.G.S.X.
0.4455.70.97Zm.2708.1.S1_atCA398368--8e-8At2g26510PDE135 (pigment defective embryo 135)O.I.H.G.S.X.
0.4455.70.97Zm.17551.1.S1_atCK368093hypothetical protein LOC100276204-1e-1At4g28180unknown proteinO.I.H.G.S.X.
0.4455.70.98Zm.18436.1.A1_atCO521866--6e-1At4g19003VPS25O.I.H.G.S.X.
0.4352.80.96Zm.3024.1.A1_atBM336593ribose-5-phosphate isomerase-6e-3At3g04790ribose 5-phosphate isomerase-relatedO.I.H.G.S.X.
0.4352.80.97Zm.12059.1.A1_atCF244848hypothetical protein LOC100273055-4e+0At5g45680FK506-binding protein 1 (FKBP13)O.I.H.G.S.X.
0.4048.50.95Zm.1199.1.S1_atCD996242hypothetical protein LOC100280192-8e+0At4g27320universal stress protein (USP) family proteinO.I.H.G.S.X.
0.4048.50.97Zm.463.1.A1_atU95953.1viviparous14-5e-6At3g14440NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3)O.I.H.G.S.X.
0.4048.50.97Zm.2749.1.A1_atAW067078--8e-5At3g18080BGLU44 (B-S GLUCOSIDASE 44)O.I.H.G.S.X.
0.4048.50.98Zm.5616.1.A1_atCK368985threonine endopeptidase-2e+0At4g12270copper amine oxidase family proteinO.I.H.G.S.X.
0.3844.20.97ZmAffx.1118.2.A1_atAW267189--8e-1At2g27360lipase, putativeO.I.H.G.S.X.
0.3844.20.98Zm.13788.1.S1_atAW313252thioredoxin reductase 2-5e-5At4g35460NTRB (NADPH-DEPENDENT THIOREDOXIN REDUCTASE B)O.I.H.G.S.X.
0.3742.30.97Zm.11938.1.A1_atBM381992hypothetical protein LOC100278050-4e+0At5g65165SDH2-3O.I.H.G.S.X.
0.3742.30.97Zm.2810.1.S1_atCK371548calcitonin peptide-receptor component protein-7e-1At1g18170immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinO.I.H.G.S.X.
0.3641.30.96Zm.4753.1.S1_atCF636516--3e-3At1g07990SIT4 phosphatase-associated family proteinO.I.H.G.S.X.
0.3641.30.97Zm.867.1.A1_atAY105682.1hypothetical protein LOC100273308-4e-8At4g20410GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN)O.I.H.G.S.X.
0.3641.30.97Zm.13027.1.A1_a_atCA403644hypothetical protein LOC100191802-2e-11At5g66680DGL1O.I.H.G.S.X.
0.3641.30.97Zm.1158.1.A1_atAY107067.1--4e-31At5g10270CDKCO.I.H.G.S.X.
0.3538.90.98Zm.6293.1.A1_atCF038760hypothetical protein LOC100216905-4e+0At5g08400unknown proteinO.I.H.G.S.X.
0.3336.00.97Zm.10119.1.A1_atAW330816hypothetical protein LOC100274094-6e-9At2g47910CRR6 (chlororespiratory reduction 6)O.I.H.G.S.X.
0.3336.00.97Zm.10972.1.A1_atAI783258hypothetical protein AY107822-3e-6At5g64500membrane protein-relatedO.I.H.G.S.X.
0.3336.00.98Zm.10479.1.S1_atBQ486450--5e+0At5g13990ATEXO70C2 (exocyst subunit EXO70 family protein C2)O.I.H.G.S.X.
0.3233.40.97Zm.18496.1.S1_atCO519895hypothetical protein LOC100217235-2e-1At5g05100nucleic acid bindingO.I.H.G.S.X.
0.3233.40.96Zm.15732.1.A1_a_atAY104940.1hypothetical protein LOC100280046-6e-9At3g06980DEAD/DEAH box helicase, putativeO.I.H.G.S.X.
0.3131.60.97Zm.2660.1.A1_atAW066755hypothetical protein LOC100194122-3e-1At3g19180ARC6HO.I.H.G.S.X.
0.3131.60.97ZmAffx.362.1.S1_atAI670617--8e-1At1g56345pseudouridine synthase family proteinO.I.H.G.S.X.
0.3131.60.97ZmAffx.966.1.S1_atAI677247--8e-1At5g47830unknown proteinO.I.H.G.S.X.
0.3131.60.97Zm.10534.1.A1_x_atCO049306receptor protein kinase CLAVATA1-2e+0At2g36890RAX2 (REGULATOR OF AXILLARY MERISTEMS 2)O.I.H.G.S.X.
0.3029.80.95Zm.8344.1.A1_atCO526131ZIM motif family protein-5e-4At1g70700TIFY7O.I.H.G.S.X.
0.3029.80.96Zm.218.1.A1_atAB016802.1MAP kinase 5-2e-50At2g43790ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)O.I.H.G.S.X.
0.2928.10.97Zm.15416.1.A1_atCD448025--2e-1At1g68862unknown proteinO.I.H.G.S.X.
0.2928.10.97Zm.12342.1.A1_atCD440814DNA binding protein-5e-1At4g16700PSD1 (phosphatidylserine decarboxylase 1)O.I.H.G.S.X.
0.2928.10.97Zm.18795.1.S1_atCO526138hypothetical protein LOC100273526-2e-8At5g11350endonuclease/exonuclease/phosphatase family proteinO.I.H.G.S.X.
0.2828.10.96Zm.5251.1.A1_atCD982303hypothetical protein LOC100273610-3e-15At4g20980eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putativeO.I.H.G.S.X.
0.2724.60.96Zm.6354.2.A1_atCF569014hypothetical protein LOC100192793-7e-1At2g45250unknown proteinO.I.H.G.S.X.
0.2724.60.98Zm.5180.1.A1_atAI612313--1e+1At5g27090AGL54O.I.H.G.S.X.
0.2724.60.95Zm.6306.1.A1_atAY301062.2calcium-dependent protein kinase ZmCPK11-9e-17At1g35670ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)O.I.H.G.S.X.
0.2724.60.97Zm.1622.1.S1_atAW787723--1e+1At4g03827unknown proteinO.I.H.G.S.X.
0.2521.30.94Zm.18410.1.S1_atCO532504--4e-15At2g44770phagocytosis and cell motility protein ELMO1-relatedO.I.H.G.S.X.
0.2521.30.96Zm.5670.1.A1_atCF635274delta-7-sterol-C5-8e-13At3g02580STE1 (STEROL 1)O.I.H.G.S.X.
0.2521.30.97Zm.19212.1.A1_atAY110394.1--1e-1At1g06160ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59)O.I.H.G.S.X.
0.2521.30.97Zm.9201.1.A1_atBM340120hypothetical protein LOC100272902-6e+0At5g62540UBC3 (ubiquitin-conjugating enzyme 3)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.198.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.198.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.998.6GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.598.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.298.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.298.0GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.997.7GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.795.4GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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