Co-expression analysis

Gene ID	Zm.7932.1.A1_at
Gene name	hypothetical protein LOC100278269
Homology with Arabidopsis	Similar to At5g20165: unknown protein (HF=2e-2)
Module size	19 genes
NF	0.24
%ile	19.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	99.2	0.93	Zm.7932.1.A1_at	BM378311	hypothetical protein LOC100278269	-	2e-2	At5g20165	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.96	Zm.17527.1.A1_at	CO534103	hypothetical protein LOC100272457	-	2e+1	At5g51520	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.92	Zm.14602.1.A1_s_at	CB380496	-	-	4e+0	At4g23720	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.96	Zm.15928.1.S1_at	CF059556	VHS and GAT domain protein	-	2e+0	At3g61550	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.95	Zm.14055.1.A1_at	AY107585.1	-	-	6e+0	At5g59340	WOX2 (WUSCHEL RELATED HOMEOBOX 2)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.95	Zm.5515.1.A1_at	CF631927	-	-	3e+0	At2g01580	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.96	Zm.5187.1.A1_at	AY104276.1	hypothetical protein LOC100272983	-	2e-4	At2g04400	indole-3-glycerol phosphate synthase (IGPS)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.96	Zm.6145.1.A1_at	CA828167	hypothetical protein LOC100192814	-	5e+0	At5g27210	-	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.97	Zm.9565.1.A1_at	BM381516	beta-expansin 3	-	6e-1	At4g19270	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.96	Zm.15995.2.A1_at	AW289130	peptidyl-prolyl cis-trans isomerase CYP19-4	-	1e-18	At5g58710	ROC7	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.96	Zm.2630.1.A1_at	AW066591	-	-	3e+0	At5g48545	histidine triad family protein / HIT family protein	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.94	Zm.5652.1.A1_at	AI629811	CCT motif family protein	-	7e-2	At3g07650	COL9 (CONSTANS-LIKE 9)	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.98	Zm.18469.1.S1_at	BM378527	oxidoreductase	-	2e-7	At4g13250	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.96	Zm.8276.1.A1_at	CF637654	-	-	3e-2	At1g53560	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.97	Zm.18283.1.A1_at	BG841297	hypothetical protein LOC100217202 /// hypothetical protein LOC100217213	-	5e+0	At5g49540	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.93	Zm.2417.1.A1_at	BM338817	LSM7-like	-	2e+0	At5g23290	PDF5 (PREFOLDIN 5)	O.I.	H.G.	S.X.	Please select
0.13	6.8	0.95	Zm.17751.1.S1_at	CK371154	-	-	1e+0	At1g14210	ribonuclease T2 family protein	O.I.	H.G.	S.X.	Please select
0.09	4.0	0.96	Zm.15576.1.A1_a_at	CK827910	-	-	3e-1	At5g01860	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.08	3.4	0.96	Zm.13226.2.A1_at	CF012904	40S ribosomal protein S9	-	1e-41	At5g39850	40S ribosomal protein S9 (RPS9C)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.4	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320439	protocol: mRNA - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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