Co-expression analysis

Gene ID Zm.7906.1.A1_at
Gene name zinc finger homeodomain protein 1
Homology with ArabidopsisSimilar to At3g28917: MIF2 (MINI ZINC FINGER 2) (HF=6e-3)
Module size 6 genes
NF 0.76
%ile 96.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8395.60.71Zm.7906.1.A1_atBM268263zinc finger homeodomain protein 1-6e-3At3g28917MIF2 (MINI ZINC FINGER 2)O.I.H.G.S.X.
0.8395.60.71Zm.910.1.A1_atCK347167--7e-13At2g45640SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18)O.I.H.G.S.X.
0.7792.10.70ZmAffx.1113.1.A1_atAI600810Hypothetical protein LOC100216906-4e+0At4g33550lipid bindingO.I.H.G.S.X.
0.6785.80.73Zm.206.3.S1_x_atY09636.140S ribosomal subunit protein S21-5e-12At3g5389040S ribosomal protein S21 (RPS21B)O.I.H.G.S.X.
0.6381.10.73Zm.818.2.A1_atCO531833Hypothetical protein LOC100216560-1e+1At5g67490unknown proteinO.I.H.G.S.X.
0.5976.10.75Zm.17634.1.A1_atCK367914--9e-1At4g19270unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.598.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.998.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.998.5GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.798.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.798.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.598.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.098.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.898.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.498.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.296.0GSM320446protocol: mRNA - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.125245.2.S1_at, orthologous to the query gene, Zm.7906.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6388.1PtpAffx.125245.2.S1_atAt3g28917hypothetical protein-2e-37At5g17060ATARFB1BO.I.H.G.S.X.
0.8096.0PtpAffx.132873.1.S1_atAt3g28917hypothetical protein-1e-5At2g30470HSI2 (HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE GENE 2)O.I.H.G.S.X.
0.7393.6Ptp.298.1.A1_atAt3g28917hypothetical protein-2e+0At3g26580-O.I.H.G.S.X.
0.6086.0Ptp.7301.1.S1_atAt3g28917--9e-1At4g03298unknown proteinO.I.H.G.S.X.
0.5984.9Ptp.454.1.S1_atAt3g28917hypothetical protein-1e+0At4g01230reticulon family protein (RTNLB7)O.I.H.G.S.X.
0.5582.2PtpAffx.16980.1.A1_atAt3g28917hypothetical protein-5e+0At3g02310SEP2 (SEPALLATA 2)O.I.H.G.S.X.
0.2950.5PtpAffx.65055.1.A1_atAt3g28917hypothetical protein-2e-21At1g04300-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera



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