Co-expression analysis

Gene ID Zm.7906.1.A1_at
Gene name zinc finger homeodomain protein 1
Homology with ArabidopsisSimilar to At3g28917: MIF2 (MINI ZINC FINGER 2) (HF=6e-3)
Module size 6 genes
NF 0.76
%ile 96.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8395.60.71Zm.7906.1.A1_atBM268263zinc finger homeodomain protein 1-6e-3At3g28917MIF2 (MINI ZINC FINGER 2)O.I.H.G.S.X.
0.8395.60.71Zm.910.1.A1_atCK347167--7e-13At2g45640SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18)O.I.H.G.S.X.
0.7792.10.70ZmAffx.1113.1.A1_atAI600810Hypothetical protein LOC100216906-4e+0At4g33550lipid bindingO.I.H.G.S.X.
0.6785.80.73Zm.206.3.S1_x_atY09636.140S ribosomal subunit protein S21-5e-12At3g5389040S ribosomal protein S21 (RPS21B)O.I.H.G.S.X.
0.6381.10.73Zm.818.2.A1_atCO531833Hypothetical protein LOC100216560-1e+1At5g67490unknown proteinO.I.H.G.S.X.
0.5976.10.75Zm.17634.1.A1_atCK367914--9e-1At4g19270unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.598.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.998.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.998.5GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.798.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.798.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.598.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.098.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.898.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.498.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.296.0GSM320446protocol: mRNA - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os11g0128300, orthologous to the query gene, Zm.7906.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5978.0Os11g0128300At3g28917-ZF-HD homeobox protein (Fragment)9e-2At3g28917MIF2 (MINI ZINC FINGER 2)O.I.H.G.S.X.
0.6583.8Os06g0208700At3g28917-Putative tyrosine phosphatase family protein8e-9At4g03960tyrosine specific protein phosphatase family proteinO.I.H.G.S.X.
0.6583.8Os01g0969000At3g28917-Conserved hypothetical protein1e+0At2g45695-O.I.H.G.S.X.
0.6079.7Os09g0548300At3g28917-Multi antimicrobial extrusion protein MatE familyprotein1e+0At5g23903unknown proteinO.I.H.G.S.X.
0.5777.0Os03g0271200At3g28917-Chloroplastic outer envelope membrane protein(OEP75) precursor (Outer membrane protein)8e-18At3g46740TOC75-III (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 75-III)O.I.H.G.S.X.
0.5168.7Os04g0661200At3g28917-Protein of unknown function DUF941 family protein1e-2At4g26310elongation factor P (EF-P) family proteinO.I.H.G.S.X.
0.4964.4Os06g0283400At3g28917-Phosphatidylinositol 3- and 4-kinase domaincontaining protein1e-16At2g03890phosphatidylinositol 3- and 4-kinase family proteinO.I.H.G.S.X.
0.4964.4Os01g0197400At3g28917-Conserved hypothetical protein1e-1At4g24300peptidaseO.I.H.G.S.X.
0.4863.7Os08g0345800At3g28917-Glucose-1-phosphate adenylyltransferase smallsubunit, chloroplast precursor (EC 2.7.7.27) (ADP-glucosesynthase) (ADP-glucose pyrophosphorylase) (AGPASE B)(Alpha-D-glucose-1-phosphate adenyl transferase)3e-96At5g48300ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1)O.I.H.G.S.X.
0.4762.3Os01g0585100At3g28917-Conserved hypothetical protein1e-17At5g35460unknown proteinO.I.H.G.S.X.
0.4558.8Os03g0799600At3g28917-ES43 like protein6e-4At4g39100SHL1 (short life)O.I.H.G.S.X.
0.4051.1Os01g0265200At3g28917-Mitochondrial substrate carrier family protein4e-3At5g01500mitochondrial substrate carrier family proteinO.I.H.G.S.X.
0.3745.0Os03g0240500At3g28917-Chloroplast protein import component Toc34 familyprotein3e+0At1g03330small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putativeO.I.H.G.S.X.
0.3644.0Os01g0350900At3g28917-The start codon is not identified.1e-8At3g05545transcription factor, putative / zinc finger (C3HC4 type RING finger) family proteinO.I.H.G.S.X.
0.3236.3Os05g0111200At3g28917-Amino acid selective channel protein7e-3At2g28900ATOEP16-1 (OUTER PLASTID ENVELOPE PROTEIN 16-1)O.I.H.G.S.X.
0.2524.1Os05g0566800At3g28917-Cold acclimation protein COR413-TM12e-3At3g09750unknown proteinO.I.H.G.S.X.
0.2422.4Os11g0163500At3g28917-Homeodomain-like containing protein9e-8At1g21200transcription factorO.I.H.G.S.X.
0.2321.2Os03g0289100At3g28917-OSK3 (OSK5)1e-52At3g01090AKIN10 (Arabidopsis SNF1 kinase homolog 10)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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