Co-expression analysis

Gene ID Zm.7905.1.S1_at
Gene name hypothetical protein LOC100193292
Homology with ArabidopsisSimilar to At1g09340: CRB (CHLOROPLAST RNA BINDING) (HF=6e-15)
Module size 6 genes
NF 0.11
%ile 6.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.99Zm.7905.1.S1_atBM078113hypothetical protein LOC100193292-6e-15At1g09340CRB (CHLOROPLAST RNA BINDING)O.I.H.G.S.X.
0.3336.00.99ZmAffx.282.1.S1_atAI670410--3e+0At5g09520hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.158.60.99ZmAffx.732.1.S1_atAI740043--5e+0At3g16640TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)O.I.H.G.S.X.
0.104.60.99Zm.8311.2.A1_a_atBM073622--4e+0At4g23090unknown proteinO.I.H.G.S.X.
0.072.90.99ZmAffx.480.1.A1_atAI677621transmembrane 9 superfamily protein member 4-8e-1At1g18871unknown proteinO.I.H.G.S.X.
0.062.30.99ZmAffx.536.1.S1_atAI711796--1e+1At5g65430GRF8 (GENERAL REGULATORY FACTOR 8)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5571.60.98Zm.3820.1.S1_atAW438235--4e+0At2g1974060S ribosomal protein L31 (RPL31A)O.I.H.G.S.X.
0.4251.30.98Zm.2319.2.A1_atCD444652--5e+0At5g65350histone H3O.I.H.G.S.X.
0.3336.00.99Zm.11891.1.A1_atBM381583helix-loop-helix DNA-binding domain containing protein-6e-2At5g42420transporter-relatedO.I.H.G.S.X.
0.3131.60.98Zm.16218.1.A1_atCF626753hypothetical protein LOC100274565-1e-1At1g79310AtMC7 (metacaspase 7)O.I.H.G.S.X.
0.3131.60.99Zm.2442.1.A1_atBG841393hypothetical protein LOC100193531-2e-1At2g45190AFO (ABNORMAL FLORAL ORGANS)O.I.H.G.S.X.
0.3131.60.99ZmAffx.794.1.A1_atAI770336--8e-1At3g21890zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.3131.60.99ZmAffx.219.1.S1_atAI670227--3e+0At3g30430F-box family proteinO.I.H.G.S.X.
0.2928.10.99Zm.2310.1.S1_atCK371642--3e+0At3g56070ROC2 (ROTAMASE CYCLOPHILIN 2)O.I.H.G.S.X.
0.2928.10.99Zm.616.1.S1_atAF326504.1tonoplast membrane integral protein ZmTIP3-1-2e+0At1g72080unknown proteinO.I.H.G.S.X.
0.2928.10.99Zm.14598.1.A1_atCF636680--2e-2At3g63460WD-40 repeat family proteinO.I.H.G.S.X.
0.2521.30.98Zm.679.1.S1_atAY029320.1barley mlo defense gene homolog9-2e-10At5g53760MLO11 (MILDEW RESISTANCE LOCUS O 11)O.I.H.G.S.X.
0.2521.30.99Zm.1094.1.A1_atBM339500--2e-5At5g26210AL4 (ALFIN-LIKE 4)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.497.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.097.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.197.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.997.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.497.0GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.497.0GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.592.6GSM385709Deep-sowing 10d treatment TIBA, biological rep1GSE15371Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowingLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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