Co-expression analysis

Gene ID Zm.7905.1.S1_at
Gene name hypothetical protein LOC100193292
Homology with ArabidopsisSimilar to At1g09340: CRB (CHLOROPLAST RNA BINDING) (HF=6e-15)
Module size 6 genes
NF 0.11
%ile 6.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.99Zm.7905.1.S1_atBM078113hypothetical protein LOC100193292-6e-15At1g09340CRB (CHLOROPLAST RNA BINDING)O.I.H.G.S.X.
0.3336.00.99ZmAffx.282.1.S1_atAI670410--3e+0At5g09520hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.158.60.99ZmAffx.732.1.S1_atAI740043--5e+0At3g16640TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)O.I.H.G.S.X.
0.104.60.99Zm.8311.2.A1_a_atBM073622--4e+0At4g23090unknown proteinO.I.H.G.S.X.
0.072.90.99ZmAffx.480.1.A1_atAI677621transmembrane 9 superfamily protein member 4-8e-1At1g18871unknown proteinO.I.H.G.S.X.
0.062.30.99ZmAffx.536.1.S1_atAI711796--1e+1At5g65430GRF8 (GENERAL REGULATORY FACTOR 8)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.497.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.097.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.197.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.997.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.497.0GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.497.0GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.592.6GSM385709Deep-sowing 10d treatment TIBA, biological rep1GSE15371Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowingLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1621301_at, orthologous to the query gene, Zm.7905.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8394.61621301_atAt1g09340hypothetical protein LOC100261308-4e-22At1g09340CRB (CHLOROPLAST RNA BINDING)O.I.H.G.S.X.
0.6183.21618324_s_atAt1g09340hypothetical protein LOC100248700-2e-5At4g34190SEP1 (STRESS ENHANCED PROTEIN 1)O.I.H.G.S.X.
0.6183.21608205_atAt1g09340similar to Elongation factor Tu, chloroplastic-1e-76At4g20360ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B)O.I.H.G.S.X.
0.5779.81613697_atAt1g09340hypothetical protein LOC100261413-1e-119At5g35630GS2 (GLUTAMINE SYNTHETASE 2)O.I.H.G.S.X.
0.5375.21610649_s_atAt1g09340hypothetical protein LOC100263855-1e-17At1g16880uridylyltransferase-relatedO.I.H.G.S.X.
0.5072.71615602_atAt1g09340hypothetical protein LOC100264091-1e-27At4g04640ATPC1O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum



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