Co-expression analysis

Gene ID Zm.7905.1.S1_at
Gene name hypothetical protein LOC100193292
Homology with ArabidopsisSimilar to At1g09340: CRB (CHLOROPLAST RNA BINDING) (HF=6e-15)
Module size 6 genes
NF 0.11
%ile 6.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.99Zm.7905.1.S1_atBM078113hypothetical protein LOC100193292-6e-15At1g09340CRB (CHLOROPLAST RNA BINDING)O.I.H.G.S.X.
0.3336.00.99ZmAffx.282.1.S1_atAI670410--3e+0At5g09520hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.158.60.99ZmAffx.732.1.S1_atAI740043--5e+0At3g16640TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)O.I.H.G.S.X.
0.104.60.99Zm.8311.2.A1_a_atBM073622--4e+0At4g23090unknown proteinO.I.H.G.S.X.
0.072.90.99ZmAffx.480.1.A1_atAI677621transmembrane 9 superfamily protein member 4-8e-1At1g18871unknown proteinO.I.H.G.S.X.
0.062.30.99ZmAffx.536.1.S1_atAI711796--1e+1At5g65430GRF8 (GENERAL REGULATORY FACTOR 8)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.497.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.097.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.197.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.997.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.497.0GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.497.0GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.592.6GSM385709Deep-sowing 10d treatment TIBA, biological rep1GSE15371Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowingLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, Gma.17726.1.S1_at, orthologous to the query gene, Zm.7905.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.6Gma.17726.1.S1_atAt1g09340--3e-37At1g09340CRB (CHLOROPLAST RNA BINDING)O.I.H.G.S.X.
0.8091.5Gma.13868.2.S1_a_atAt1g09340glyceraldehyde-3-phosphate dehydrogenase B subunit-6e-43At1g42970GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT)O.I.H.G.S.X.
0.7790.3Gma.10851.1.S1_atAt1g09340--2e-51At1g32060PRK (PHOSPHORIBULOKINASE)O.I.H.G.S.X.
0.7388.9Gma.1277.1.S1_atAt1g09340--3e-12At1g76080CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD)O.I.H.G.S.X.
0.7388.9Gma.5672.3.S1_a_atAt1g09340--3e-34At1g06680PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1)O.I.H.G.S.X.
0.4463.3Gma.11037.1.S1_atAt1g09340glyceraldehyde-3-phosphate dehydrogenase A subunit-1e-104At3g26650GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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