Co-expression analysis

Gene ID	Zm.7847.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g27416: unknown protein (HF=1e+0)
Module size	22 genes
NF	0.35
%ile	35.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.2	0.95	Zm.7847.1.A1_at	BM080149	-	-	1e+0	At3g27416	unknown protein	O.I.	H.G.	S.X.	Please select
0.64	81.7	0.96	Zm.4338.1.A1_at	CF638243	peroxidase 72	-	1e-8	At5g66390	peroxidase 72 (PER72) (P72) (PRXR8)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.96	Zm.11661.1.A1_at	BM379776	-	-	1e+0	At3g24570	peroxisomal membrane 22 kDa family protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.8040.1.A1_a_at	BM073932	hypothetical protein LOC100274921	-	1e+0	At5g46620	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.96	Zm.4122.1.S1_at	AY107878.1	-	-	2e+0	At5g07490	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.98	Zm.11992.1.A1_at	BM382475	-	-	3e+0	At5g41614	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.97	ZmAffx.601.1.A1_at	AI715029	-	-	8e-1	At1g35430	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.97	Zm.19138.1.S1_at	CO525589	hypothetical protein LOC100277966	-	5e-1	At2g46300	-	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.97	Zm.5985.3.S1_at	CF041948	-	-	4e-28	At4g16340	SPK1 (SPIKE1)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.98	Zm.18374.1.A1_at	CO521737	hypothetical protein LOC100191144	-	1e-1	At1g21890	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.97	Zm.19304.1.A1_at	CO525321	hypothetical protein LOC100192965	-	3e-1	At1g55230	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.19127.1.A1_at	AY110588.1	-	-	2e-3	At4g01660	ATABC1 (ARABIDOPSIS THALIANA ABC TRANSPORTER 1)	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.98	Zm.3735.1.A1_at	AY107167.1	hypothetical protein LOC100277155	-	5e-8	At4g39860	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.97	Zm.1574.1.S1_at	AY106519.1	-	-	6e-20	At2g24320	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.97	Zm.17724.1.S1_a_at	CF623515	hypothetical protein LOC100278419	-	1e+0	At3g56240	CCH (COPPER CHAPERONE)	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.97	Zm.375.1.S1_at	AF057184.1	trypsin inhibitor	-	1e-1	At5g02440	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.97	Zm.4762.1.A1_at	BG874087	-	-	2e-6	At1g25540	PFT1 (PHYTOCHROME AND FLOWERING TIME 1)	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.97	Zm.18278.1.S1_at	CK371368	-	-	1e-26	At3g52200	LTA3	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.97	Zm.1940.1.S1_at	AW507032	-	-	5e-1	At4g13615	four F5 protein-related / 4F5 protein-related	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.98	Zm.3707.1.A1_at	AY107773.1	vacuolar cation/proton exchanger 2	-	1e-4	At3g13320	CAX2 (CATION EXCHANGER 2)	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.98	Zm.15421.1.S1_at	AY107122.1	-	-	1e+0	At3g42050	vacuolar ATP synthase subunit H family protein	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.97	Zm.18885.1.A1_at	CO530040	hypothetical protein LOC100276818	-	3e+0	At5g28780	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.0	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.3	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.0	99.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.4	99.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.0	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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