Co-expression analysis

Gene ID Zm.7831.1.A1_at
Gene name hypothetical protein LOC100192532
Homology with ArabidopsisSimilar to At3g25540: LAG1 (HF=1e+0)
Module size 30 genes
NF 0.36
%ile 38.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.96Zm.7831.1.A1_atBM080062hypothetical protein LOC100192532-1e+0At3g25540LAG1O.I.H.G.S.X.
0.5674.40.97Zm.5018.3.A1_atAI668145--9e-1At5g48920TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7)O.I.H.G.S.X.
0.5166.40.97Zm.17848.1.A1_s_atCK786759hypothetical protein LOC100279789-2e+1At5g27980seed maturation family proteinO.I.H.G.S.X.
0.5065.70.97Zm.16535.2.A1_s_atCF062633hypothetical protein LOC100276314-0At1g50010TUA2O.I.H.G.S.X.
0.5065.70.97Zm.16536.1.A1_a_atAY103592.1hypothetical protein LOC100272866 /// spermidine synthase 1-1e-17At1g23820SPDS1 (spermidine synthase 1)O.I.H.G.S.X.
0.4658.40.97Zm.17636.1.A1_atCK368463--1e+0At5g34882-O.I.H.G.S.X.
0.4658.40.97Zm.3086.2.A1_a_atCF633704alpha-1,4-glucan-protein synthase-5e+0At4g11350transferase, transferring glycosyl groupsO.I.H.G.S.X.
0.4556.40.98Zm.17902.1.A1_atCK786798--3e+0At5g65350histone H3O.I.H.G.S.X.
0.4556.40.98Zm.7152.1.A1_atAY110483.1hypothetical protein LOC100216962-7e-5At5g47500pectinesterase family proteinO.I.H.G.S.X.
0.4455.70.98Zm.5018.2.S1_atAY112461.1Hypothetical protein LOC100194303-4e-1At5g49350unknown proteinO.I.H.G.S.X.
0.4455.70.97Zm.383.1.S1_s_atAF023165.1leucine-rich repeat transmembrane protein kinase 2-1e-22At3g14350SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)O.I.H.G.S.X.
0.4048.50.98Zm.16536.1.A1_atAY103592.1spermidine synthase 1-1e-17At1g23820SPDS1 (spermidine synthase 1)O.I.H.G.S.X.
0.4048.50.97Zm.9606.1.A1_atBM333711hypothetical protein LOC100278162-1e-1At5g08350GRAM domain-containing protein / ABA-responsive protein-relatedO.I.H.G.S.X.
0.3945.60.97Zm.16547.1.A1_atCO520746aldehyde dehydrogenase, dimeric NADP-preferring-6e+0At3g10020unknown proteinO.I.H.G.S.X.
0.3844.20.96Zm.13852.1.S1_atAF351192.1--2e+1At5g15970KIN2O.I.H.G.S.X.
0.3844.20.98Zm.12836.1.S1_atCA400077MPPN domain containing protein-2e+0At2g21220auxin-responsive protein, putativeO.I.H.G.S.X.
0.3437.20.97Zm.14149.1.A1_atAY111524.1--1e+0At5g55135unknown proteinO.I.H.G.S.X.
0.3233.40.97Zm.6213.1.A1_atCA400757hypothetical protein LOC100216861-6e+0At5g22210unknown proteinO.I.H.G.S.X.
0.3233.40.97Zm.16315.1.S1_x_atAF326488.1plasma membrane integral protein ZmPIP1-3-3e-24At3g61430PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A)O.I.H.G.S.X.
0.3233.40.97Zm.12345.2.S1_atAY111982.1--4e+0At5g08050-O.I.H.G.S.X.
0.3131.60.97Zm.6201.1.A1_atBE643575--1e-1At3g50690leucine-rich repeat family proteinO.I.H.G.S.X.
0.3131.60.96Zm.5276.1.A1_atAY108798.1brain protein 44-like-2e-5At5g20090unknown proteinO.I.H.G.S.X.
0.2828.10.98Zm.14366.1.S1_atCD438154m28 protein-2e-4At5g60910AGL8 (agamous-like 8)O.I.H.G.S.X.
0.2622.70.97Zm.4024.1.A1_atAY105692.1--1e-3At2g35170MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-relatedO.I.H.G.S.X.
0.2622.70.97Zm.741.1.A1_atAW287831kelch motif family protein-8e-3At1g14330kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.2622.70.97Zm.5218.1.A1_atAY111426.1--3e+0At2g30130ASL5O.I.H.G.S.X.
0.2521.30.97Zm.5985.3.A1_a_atCF041948hypothetical protein LOC100273928-4e-28At4g16340SPK1 (SPIKE1)O.I.H.G.S.X.
0.2419.80.97Zm.3773.1.A1_atAY110209.1Hypothetical protein LOC100193094-4e+0At4g18620-O.I.H.G.S.X.
0.2318.60.98Zm.2157.6.S1_x_atCD439607hypothetical protein LOC100193584 /// hypothetical protein LOC100194217 /// glycine-rich RNA-binding protein 2-7e-7At4g39260GR-RBP8O.I.H.G.S.X.
0.1912.80.96Zm.9585.1.A1_atBM340807--4e-1At3g22930calmodulin, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.898.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.598.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.298.4GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.798.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.198.0GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.797.9GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.397.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.097.7GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.993.8GSM320467protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage