Co-expression analysis

Gene ID Zm.782.1.A1_at
Gene name hypothetical protein LOC100273031
Homology with ArabidopsisSimilar to At2g27680: aldo/keto reductase family protein (HF=4e-30)
Module size 6 genes
NF 0.50
%ile 64.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5369.10.87Zm.782.1.A1_atCA404412hypothetical protein LOC100273031-4e-30At2g27680aldo/keto reductase family proteinO.I.H.G.S.X.
0.5976.10.92Zm.144.1.S1_x_atU10696.1metallothionein2-2e+1At5g38344transmembrane receptorO.I.H.G.S.X.
0.5369.10.92RPTR-Zm-X17220-1_atRPTR-Zm-X17220-1---O.I.H.G.S.X.
0.5065.71.00RPTR-Zm-J01347-4_atRPTR-Zm-J01347-4---O.I.H.G.S.X.
0.5065.71.00RPTR-Zm-J01636-1_atRPTR-Zm-J01636-1---O.I.H.G.S.X.
0.2622.70.92Zm.2768.1.A1_atAW067159Hypothetical protein LOC100193535-1e+0At5g04760myb family transcription factorO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.799.4GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
16.099.0GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.699.0GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.398.7GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.598.6GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.198.2GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.598.1GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.396.1GSM290553WS1 with array type maize from AffymetrixGSE11531Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)Link to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1609325_at, orthologous to the query gene, Zm.782.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7390.81609325_atAt2g27680hypothetical protein LOC100267099-2e-14At2g27680aldo/keto reductase family proteinO.I.H.G.S.X.
0.8895.41613773_s_atAt2g27680hypothetical protein LOC100256361-3e-11At2g30570PSBW (PHOTOSYSTEM II REACTION CENTER W)O.I.H.G.S.X.
0.8795.21614409_atAt2g27680hypothetical protein LOC100266036-1e-72At3g61470LHCA2O.I.H.G.S.X.
0.8093.61619903_atAt2g27680hypothetical protein LOC100263275-8e-71At3g54890LHCA1O.I.H.G.S.X.
0.8093.61613991_atAt2g27680hypothetical protein LOC100252545-5e-4At1g67740PSBYO.I.H.G.S.X.
0.7390.81620292_atAt2g27680hypothetical protein LOC100264686-3e-1At2g45434unknown proteinO.I.H.G.S.X.
0.7289.71621532_atAt2g27680hypothetical protein LOC100261762-7e-6At1g30380PSAK (photosystem I subunit K)O.I.H.G.S.X.
0.7088.61622715_s_atAt2g27680hypothetical protein LOC100246378-3e-68At1g12900GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2)O.I.H.G.S.X.
0.6988.31617428_atAt2g27680hypothetical protein LOC100259814-7e-57At1g42970GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT)O.I.H.G.S.X.
0.6787.91614593_atAt2g27680hypothetical protein LOC100246457-2e-96At4g10340LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5)O.I.H.G.S.X.
0.6183.21614598_atAt2g27680hypothetical protein LOC100266604-2e-4At3g08940LHCB4.2 (light harvesting complex PSII)O.I.H.G.S.X.
0.5879.81610360_atAt2g27680hypothetical protein LOC100243957-9e-5At2g06520PSBX (photosystem II subunit X)O.I.H.G.S.X.
0.5679.41618370_atAt2g27680hypothetical protein LOC100242802-8e-31At4g12800PSAL (photosystem I subunit L)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum



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