Co-expression analysis

Gene ID Zm.782.1.A1_at
Gene name hypothetical protein LOC100273031
Homology with ArabidopsisSimilar to At2g27680: aldo/keto reductase family protein (HF=4e-30)
Module size 6 genes
NF 0.50
%ile 64.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5369.10.87Zm.782.1.A1_atCA404412hypothetical protein LOC100273031-4e-30At2g27680aldo/keto reductase family proteinO.I.H.G.S.X.
0.5976.10.92Zm.144.1.S1_x_atU10696.1metallothionein2-2e+1At5g38344transmembrane receptorO.I.H.G.S.X.
0.5369.10.92RPTR-Zm-X17220-1_atRPTR-Zm-X17220-1---O.I.H.G.S.X.
0.5065.71.00RPTR-Zm-J01347-4_atRPTR-Zm-J01347-4---O.I.H.G.S.X.
0.5065.71.00RPTR-Zm-J01636-1_atRPTR-Zm-J01636-1---O.I.H.G.S.X.
0.2622.70.92Zm.2768.1.A1_atAW067159Hypothetical protein LOC100193535-1e+0At5g04760myb family transcription factorO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.799.4GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
16.099.0GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.699.0GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.398.7GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.598.6GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.198.2GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.598.1GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.396.1GSM290553WS1 with array type maize from AffymetrixGSE11531Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)Link to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.204476.1.S1_at, orthologous to the query gene, Zm.782.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8096.0PtpAffx.204476.1.S1_atAt2g27680hypothetical protein-3e-67At2g27680aldo/keto reductase family proteinO.I.H.G.S.X.
0.6791.1Ptp.5277.1.S1_s_atAt2g27680hypothetical protein-2e-37At2g27680aldo/keto reductase family proteinO.I.H.G.S.X.
0.5784.2PtpAffx.7365.1.A1_s_atAt2g27680hypothetical protein-4e-6At2g27680aldo/keto reductase family proteinO.I.H.G.S.X.
0.5078.6PtpAffx.206417.1.S1_atAt2g27680hypothetical protein-2e-6At1g24650leucine-rich repeat family protein / protein kinase family proteinO.I.H.G.S.X.
0.4471.9PtpAffx.38860.2.S1_a_atAt2g27680amidase family protein-1e-7At1g08980AMI1 (AMIDASE 1)O.I.H.G.S.X.
0.3661.6PtpAffx.209619.1.S1_atAt2g27680hypothetical protein-1e-121At4g04350EMB2369 (EMBRYO DEFECTIVE 2369)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera



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