Co-expression analysis

Gene ID	Zm.782.1.A1_at
Gene name	hypothetical protein LOC100273031
Homology with Arabidopsis	Similar to At2g27680: aldo/keto reductase family protein (HF=4e-30)
Module size	6 genes
NF	0.50
%ile	64.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.1	0.87	Zm.782.1.A1_at	CA404412	hypothetical protein LOC100273031	-	4e-30	At2g27680	aldo/keto reductase family protein	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.92	Zm.144.1.S1_x_at	U10696.1	metallothionein2	-	2e+1	At5g38344	transmembrane receptor	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.92	RPTR-Zm-X17220-1_at	RPTR-Zm-X17220-1	-	-			-	O.I.	H.G.	S.X.	Please select
0.50	65.7	1.00	RPTR-Zm-J01347-4_at	RPTR-Zm-J01347-4	-	-			-	O.I.	H.G.	S.X.	Please select
0.50	65.7	1.00	RPTR-Zm-J01636-1_at	RPTR-Zm-J01636-1	-	-			-	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.92	Zm.2768.1.A1_at	AW067159	Hypothetical protein LOC100193535	-	1e+0	At5g04760	myb family transcription factor	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.7	99.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.0	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM290553	WS1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.204476.1.S1_at, orthologous to the query gene, Zm.782.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	96.0	PtpAffx.204476.1.S1_at	At2g27680	hypothetical protein	-	3e-67	At2g27680	aldo/keto reductase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.5277.1.S1_s_at	At2g27680	hypothetical protein	-	2e-37	At2g27680	aldo/keto reductase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.7365.1.A1_s_at	At2g27680	hypothetical protein	-	4e-6	At2g27680	aldo/keto reductase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.206417.1.S1_at	At2g27680	hypothetical protein	-	2e-6	At1g24650	leucine-rich repeat family protein / protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.38860.2.S1_a_at	At2g27680	amidase family protein	-	1e-7	At1g08980	AMI1 (AMIDASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.209619.1.S1_at	At2g27680	hypothetical protein	-	1e-121	At4g04350	EMB2369 (EMBRYO DEFECTIVE 2369)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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