Co-expression analysis

Gene ID	Zm.7750.4.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g75780: TUB1 (HF=3e-28)
Module size	12 genes
NF	0.51
%ile	65.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	76.1	0.98	Zm.7750.4.S1_at	AW499152	-	-	3e-28	At1g75780	TUB1	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.18084.1.A1_at	CD997940	-	-	8e-7	At1g16870	mitochondrial 28S ribosomal protein S29-related	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.98	Zm.11328.1.A1_at	CA401316	hypothetical protein LOC100274553	-	6e+0	At2g30130	ASL5	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.98	Zm.14898.1.A1_x_at	BM351319	-	-	4e+0	At3g43800	ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27)	O.I.	H.G.	S.X.	Please select
0.58	75.1	0.98	ZmAffx.525.1.A1_at	AI711680	-	-	8e-1	At5g23170	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.99	Zm.16316.1.A1_at	CF244157	ATP binding protein	-	2e-1	At5g19210	DEAD/DEAH box helicase, putative	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.98	Zm.11338.1.A1_at	BM349130	hypothetical protein LOC100274516	-	3e-6	At2g40190	glycosyl transferase family 1 protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.99	ZmAffx.1017.1.A1_at	AI881523	Hypothetical protein LOC100193713	-	3e+0	At3g25030	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.98	Zm.11611.1.A1_at	BM379298	hypothetical protein LOC100192942	-	5e+0	At1g07400	17.8 kDa class I heat shock protein (HSP17.8-CI)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.98	ZmAffx.531.1.A1_at	AI711719	-	-	8e-1	At5g20370	serine-rich protein-related	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.99	Zm.1134.1.A1_at	AY112160.1	hypothetical protein LOC100193278	-	3e+0	At2g26940	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.99	Zm.5230.1.A1_at	CA404914	acyl-desaturase	-	2e-17	At2g43710	SSI2	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.1	97.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM320468	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM290554	WS2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
4.0	95.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM290553	WS1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
3.8	95.5	GSM375791	Deep-sowing 10d treatment GA3, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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